C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycoprotein Ib, beta polypeptide
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167388 Gp1bb-202 ENSMUSG00000050761 10090 - 16:18620319-18622403 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartKidneyLiverLungENSMUST00000167388
Transcript ID Heart Kidney Liver Lung
ENSMUST00000167388 1.339±0.07 0.199±0.00 6.484±5.44 2.210±0.30

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00095F CIL_00095F_0002 VISTA 16:18254168-18857637
CIL_00099J CIL_00099J_0002 VISTA 16:18285741-18886132
CIL_0008BW CIL_0008BW_0002 VISTA 16:18293232-18893684
CIL_0000RI CIL_0000RI_0002 CGP 16:18620319-18629938

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005887 ISS integral component of plasma membrane
GO:0007155 ISS cell adhesion
GO:0007596 IEA blood coagulation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366425 GP1BB-001 protein_coding Homo_sapiens 0 760
ENST00000406172 SEPT5-015 nonsense_mediated_decay Homo_sapiens 1e-30 139
ENST00000431044 SEPT5-006 nonsense_mediated_decay Homo_sapiens 0 760
ENST00000438754 SEPT5-002 protein_coding Homo_sapiens 1e-30 139
ENST00000455784 SEPT5-001 protein_coding Homo_sapiens 1e-30 139
ENST00000455843 SEPT5-003 nonsense_mediated_decay Homo_sapiens 0 612
ENST00000470814 SEPT5-005 retained_intron Homo_sapiens 0 627
ENST00000622227 SEPT5-201 protein_coding Homo_sapiens 8e-32 143

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