C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: zinc finger protein 54
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167749 Zfp54-003 ENSMUSG00000023882 10090 + 17:21423258-21433945 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167749
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167749 0.533±0.17 0.590±0.00 0.790±0.00 0.339±0.05 0.507±0.20 0.146±0.07 0.285±0.10 0.313±0.13 0.537±0.20 0.226±0.00 0.782±0.52 1.180±0.60 1.604±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006L8 CIL_0006L8_000B CGP 17:21383748-21435640
CIL_0004HA CIL_0004HA_0003 CGP 17:21423227-21465591

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0006355 IBA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304239 ZNF420-002 protein_coding Homo_sapiens 1e-19 102
ENST00000337995 ZNF420-001 protein_coding Homo_sapiens 2e-19 102
ENST00000392170 ZNF566-001 protein_coding Homo_sapiens 2e-18 99
ENST00000424129 ZNF566-002 protein_coding Homo_sapiens 2e-18 99
ENST00000427002 ZNF566-009 protein_coding Homo_sapiens 5e-19 99
ENST00000434377 ZNF566-201 protein_coding Homo_sapiens 4e-18 99
ENST00000452939 ZNF566-008 protein_coding Homo_sapiens 6e-19 99
ENST00000460937 ZNF566-006 retained_intron Homo_sapiens 5e-19 99
ENST00000480361 ZNF566-005 retained_intron Homo_sapiens 4e-19 99
ENST00000587029 ZNF420-008 protein_coding Homo_sapiens 4e-20 102
ENST00000587082 ZNF420-007 nonsense_mediated_decay Homo_sapiens 4e-20 102
ENST00000589245 ZNF420-005 protein_coding Homo_sapiens 4e-20 102
ENST00000589461 ZNF420-006 nonsense_mediated_decay Homo_sapiens 3e-20 102

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