C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: zinc finger protein 54
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000023882 Zfp54 10090 + 17:21423227-21435640 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000007884 Zfp54-001 21423233-21435154 protein_coding
  ENSMUST00000165230 Zfp54-002 21423227-21435640 protein_coding
  ENSMUST00000167749 Zfp54-003 21423258-21433945 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Gene structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000007884ENSMUST00000165230ENSMUST00000167749
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000007884 0.454±0.13 0.262±0.15 2.955±0.83 0.500±0.26 0.339±0.15 0.553±0.19 0.120±0.04 0.389±0.08 0.621±0.50 0.413±0.08 0.355±0.09 0.725±0.77 1.558±0.70 1.139±0.09
ENSMUST00000165230 N/A N/A 0.235±0.02 0.147±0.00 0.146±0.05 0.545±0.00 0.069±0.03 0.106±0.00 0.216±0.10 0.302±0.00 0.069±0.04 N/A 0.130±0.00 N/A
ENSMUST00000167749 0.533±0.17 0.590±0.00 N/A 0.790±0.00 0.339±0.05 0.507±0.20 0.146±0.07 0.285±0.10 0.313±0.13 0.537±0.20 0.226±0.00 0.782±0.52 1.180±0.60 1.604±0.93

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006L8 CIL_0006L8_000B CGP 17:21383748-21435640
CIL_0004HA CIL_0004HA_0003 CGP 17:21423227-21465591

Gene Ontology
GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0003700 IBA sequence-specific DNA binding transcription factor activity
GO:0005622 IEA intracellular
GO:0006355 IBA regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSG00000167554 ZNF610 zinc finger protein 610 protein_coding Homo_sapiens
ENSG00000167562 ZNF701 zinc finger protein 701 protein_coding Homo_sapiens
ENSG00000167766 ZNF83 zinc finger protein 83 protein_coding Homo_sapiens
ENSG00000170954 ZNF415 zinc finger protein 415 protein_coding Homo_sapiens
ENSG00000180257 ZNF816 zinc finger protein 816 protein_coding Homo_sapiens
ENSG00000182986 ZNF320 zinc finger protein 320 protein_coding Homo_sapiens
ENSG00000196214 ZNF766 zinc finger protein 766 protein_coding Homo_sapiens
ENSG00000196417 ZNF765 zinc finger protein 765 protein_coding Homo_sapiens
ENSG00000197385 ZNF860 zinc finger protein 860 protein_coding Homo_sapiens
ENSG00000197928 ZNF677 zinc finger protein 677 protein_coding Homo_sapiens
ENSG00000198346 ZNF813 zinc finger protein 813 protein_coding Homo_sapiens
ENSG00000198464 ZNF480 zinc finger protein 480 protein_coding Homo_sapiens
ENSG00000198538 ZNF28 zinc finger protein 28 protein_coding Homo_sapiens
ENSG00000198633 ZNF534 zinc finger protein 534 protein_coding Homo_sapiens
ENSG00000203326 ZNF525 zinc finger protein 525 protein_coding Homo_sapiens
ENSG00000204604 ZNF468 zinc finger protein 468 protein_coding Homo_sapiens
ENSG00000213020 ZNF611 zinc finger protein 611 protein_coding Homo_sapiens
ENSG00000221874 ZNF321P zinc finger protein 321, pseudogene protein_coding Homo_sapiens
ENSG00000221923 ZNF880 zinc finger protein 880 protein_coding Homo_sapiens
ENSG00000258405 ZNF578 zinc finger protein 578 protein_coding Homo_sapiens

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