C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming growth factor beta 1 induced transcript 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167965 Tgfb1i1-003 ENSMUSG00000030782 10090 + 7:128246978-128253707 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167965
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167965 37.896±21.76 3.106±0.82 79.624±21.44 3.255±1.09 10.896±3.07 23.597±1.19 5.365±0.98 3.511±0.74 2.206±1.71 30.192±0.86 1.903±0.32 33.040±12.42 6.452±4.35 1.236±0.09

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00035P CIL_00035P_0002 CGP 7:128237357-128253712
CIL_000708 CIL_000708_0002 CGP 7:128246812-128272430

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003713 IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0005925 IDA focal adhesion
GO:0008270 IEA zinc ion binding
GO:0009408 IEA response to heat
GO:0010718 IEA positive regulation of epithelial to mesenchymal transition
GO:0016055 IEA Wnt signaling pathway
GO:0016331 IMP morphogenesis of embryonic epithelium
GO:0030511 IEA positive regulation of transforming growth factor beta receptor signaling pathway
GO:0030512 IEA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0030579 IEA ubiquitin-dependent SMAD protein catabolic process
GO:0030855 IGI epithelial cell differentiation
GO:0031012 IEA extracellular matrix
GO:0045165 IGI cell fate commitment
GO:0045599 IGI negative regulation of fat cell differentiation
GO:0045893 IEA positive regulation of transcription, DNA-templated
GO:0048495 IEA Roundabout binding
GO:0050681 IEA androgen receptor binding
GO:0070411 IEA I-SMAD binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361773 TGFB1I1-201 protein_coding Homo_sapiens 0 1578
ENST00000394858 TGFB1I1-002 protein_coding Homo_sapiens 0 1574
ENST00000394863 TGFB1I1-001 protein_coding Homo_sapiens 0 1613
ENST00000561785 TGFB1I1-017 retained_intron Homo_sapiens 0 230
ENST00000562165 TGFB1I1-018 retained_intron Homo_sapiens 0 405
ENST00000562566 TGFB1I1-015 protein_coding Homo_sapiens 0 364
ENST00000563712 TGFB1I1-007 nonsense_mediated_decay Homo_sapiens 0 1218
ENST00000564176 TGFB1I1-003 retained_intron Homo_sapiens 0 566
ENST00000564804 TGFB1I1-005 nonsense_mediated_decay Homo_sapiens 0 1140
ENST00000565360 TGFB1I1-020 protein_coding Homo_sapiens 0 568
ENST00000565454 TGFB1I1-012 protein_coding Homo_sapiens 0 586
ENST00000567066 TGFB1I1-006 nonsense_mediated_decay Homo_sapiens 0 1439
ENST00000567524 TGFB1I1-016 retained_intron Homo_sapiens 1.99965e-42 176
ENST00000567607 TGFB1I1-004 protein_coding Homo_sapiens 0 1576
ENST00000568142 TGFB1I1-019 retained_intron Homo_sapiens 0 752
ENST00000569254 TGFB1I1-014 retained_intron Homo_sapiens 0 316
ENST00000569703 TGFB1I1-021 retained_intron Homo_sapiens 0 1002

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