C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tumor suppressor candidate 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000167992 Tusc3-201 ENSMUSG00000039530 10090 + 8:39005867-39165112 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000167992
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000167992 22.958±15.09 38.893±12.64 42.023±15.74 64.139±21.11 19.426±5.35 37.080±9.37 7.748±0.87 22.886±10.74 12.774±9.36 31.239±17.71 1.820±0.36 57.806±23.63 15.329±6.19 27.551±19.33

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00006V CIL_00006V_0003 CGP 8:37522298-39165112
CIL_000456 CIL_000456_0002 CGP 8:39005867-39642678

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004579 ISS dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0005739 IDA mitochondrion
GO:0008250 ISS oligosaccharyltransferase complex
GO:0015095 ISS magnesium ion transmembrane transporter activity
GO:0015693 ISS magnesium ion transport
GO:0016021 IEA integral component of membrane
GO:0018279 ISS protein N-linked glycosylation via asparagine
GO:0045454 IEA cell redox homeostasis
GO:0050890 ISS cognition

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000382020 TUSC3-001 protein_coding Homo_sapiens 0 1725
ENST00000503191 TUSC3-011 processed_transcript Homo_sapiens 0 549
ENST00000503731 TUSC3-007 protein_coding Homo_sapiens 0 1480
ENST00000506802 TUSC3-004 protein_coding Homo_sapiens 0 1399
ENST00000507316 TUSC3-009 retained_intron Homo_sapiens 0 237
ENST00000507400 TUSC3-012 processed_transcript Homo_sapiens 0 880
ENST00000508446 TUSC3-010 processed_transcript Homo_sapiens 2e-27 126
ENST00000509177 TUSC3-013 retained_intron Homo_sapiens 0 337
ENST00000509380 TUSC3-006 protein_coding Homo_sapiens 0 1245
ENST00000510836 TUSC3-005 nonsense_mediated_decay Homo_sapiens 0 1151
ENST00000511342 TUSC3-014 retained_intron Homo_sapiens 0 237
ENST00000511783 TUSC3-008 protein_coding Homo_sapiens 0 1206
ENST00000515859 TUSC3-003 nonsense_mediated_decay Homo_sapiens 0 1197

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