C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 9
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000296682 PRDM9-001 ENSG00000164256 9606 + 5:23507615-23528597 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; HeartPlacentaTestisENST00000296682
Transcript ID Heart Placenta Testis
ENST00000296682 0.010±0.00 0.030±0.02 2.099±0.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005694 IEA chromosome
GO:0006311 IDA meiotic gene conversion
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007283 IEA spermatogenesis
GO:0010844 IEA recombination hotspot binding
GO:0010845 IMP positive regulation of reciprocal meiotic recombination
GO:0016571 IEA histone methylation
GO:0034968 IEA histone lysine methylation
GO:0042800 IEA histone methyltransferase activity (H3-K4 specific)
GO:0043565 IEA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0046872 IEA metal ion binding
GO:0051568 IEA histone H3-K4 methylation
GO:0060903 IEA positive regulation of meiosis I

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000167994 Prdm9-201 protein_coding Mus_musculus 0 2146
ENSMUST00000128267 Prdm9-002 retained_intron Mus_musculus 0 725
ENSMUST00000147532 Prdm9-001 protein_coding Mus_musculus 0 721
ENSMUST00000130297 Prdm9-005 retained_intron Mus_musculus 0 638
ENSMUST00000049861 Rbak-201 protein_coding Mus_musculus 2e-24 119
ENSMUST00000164068 Rbak-002 protein_coding Mus_musculus 2e-24 119
ENSMUST00000166382 Rbak-003 protein_coding Mus_musculus 2e-24 119
ENSMUST00000165318 Rbak-001 protein_coding Mus_musculus 2e-24 119

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