C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jade family PHD finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168086 Jade1-203 ENSMUSG00000025764 10090 + 3:41564880-41616862 protein_coding

Mus musculus EnsemblGRCm38

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverMuscleOvaryPlacentaTestisENSMUST00000168086
Transcript ID Adipose Adrenal Brain Breast Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000168086 0.583±0.00 0.809±0.00 1.413±0.83 0.846±0.28 1.114±0.46 0.811±0.29 0.812±0.00 1.478±0.94 7.257±2.23 0.630±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00001N CIL_00001N_0002 CGP 3:41066326-41616862
CIL_00001M CIL_00001M_0002 CGP 3:41555734-41742514

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000123 ISS histone acetyltransferase complex
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0008270 IEA zinc ion binding
GO:0043966 ISS histone H3 acetylation
GO:0043981 ISS histone H4-K5 acetylation
GO:0043982 ISS histone H4-K8 acetylation
GO:0043983 ISS histone H4-K12 acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121706 jade1-201 protein_coding Danio_rerio 0 483
ENSDART00000042060 jade1-001 protein_coding Danio_rerio 0 483
ENSDART00000143852 jade1-003 retained_intron Danio_rerio 0 246
ENST00000226319 JADE1-201 protein_coding Homo_sapiens 0 3406
ENST00000413543 JADE1-001 protein_coding Homo_sapiens 0 2119
ENST00000452328 JADE1-003 protein_coding Homo_sapiens 0 2885
ENST00000503565 SCLT1-009 processed_transcript Homo_sapiens 0.00000000000002 84
ENST00000503785 JADE1-007 protein_coding Homo_sapiens 0 577
ENST00000504089 JADE1-005 protein_coding Homo_sapiens 0 597
ENST00000507833 JADE1-009 protein_coding Homo_sapiens 0 582
ENST00000508997 JADE1-010 protein_coding Homo_sapiens 0 556
ENST00000510308 JADE1-006 protein_coding Homo_sapiens 0 789
ENST00000511647 JADE1-002 protein_coding Homo_sapiens 0 2061
ENST00000511925 JADE1-011 nonsense_mediated_decay Homo_sapiens 0 385
ENST00000512960 JADE1-004 protein_coding Homo_sapiens 0 3188
ENST00000514740 JADE1-008 protein_coding Homo_sapiens 7e-32 141
ENST00000610919 JADE1-202 protein_coding Homo_sapiens 0 3594
ENST00000611140 JADE1-203 protein_coding Homo_sapiens 0 3400

Loading