C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 6 (neutral amino acid transporter), member 17
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000331565 SLC6A17-001 ENSG00000197106 9606 + 1:110150486-110202202 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000331565
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000331565 0.117±0.00 0.027±0.00 0.122±0.00 19.820±12.43 0.013±0.00 0.240±0.00 0.011±0.01 0.806±0.78 0.023±0.00 0.042±0.00 0.035±0.00 0.028±0.01 0.483±0.17 1.223±0.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006U2 CIL_0006U2_0002 CGP 1:110150486-110283100

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005328 IEA neurotransmitter:sodium symporter activity
GO:0005887 IEA integral component of plasma membrane
GO:0006836 IEA neurotransmitter transport
GO:0008021 ISS synaptic vesicle
GO:0015804 ISS neutral amino acid transport
GO:0015816 ISS glycine transport
GO:0015820 ISS leucine transport
GO:0015824 ISS proline transport
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0032328 ISS alanine transport
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000169449 Slc6a17-001 protein_coding Mus_musculus 0 3432
ENSMUST00000029499 Slc6a17-002 protein_coding Mus_musculus 0 3378
ENSMUST00000168211 Slc6a17-003 nonsense_mediated_decay Mus_musculus 0 2964
ENSMUST00000167898 Slc6a17-004 retained_intron Mus_musculus 0 1469
ENSMUST00000170429 Slc6a17-005 processed_transcript Mus_musculus 0 1267
ENSDART00000156570 slc6a17-201 protein_coding Danio_rerio 0 965
ENSDART00000099607 slc6a17-001 protein_coding Danio_rerio 0 942
ENSMUST00000166892 Slc6a17-006 protein_coding Mus_musculus 0 542
ENSMUST00000167975 Slc6a17-009 processed_transcript Mus_musculus 0 344

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