C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DENN/MADD domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168527 Dennd1b-201 ENSMUSG00000056268 10090 + 1:138963709-139176043 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000168527
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000168527 0.951±0.04 0.688±0.22 0.750±0.14 1.801±1.15 1.223±0.43 1.222±0.26 0.946±0.37 0.472±0.32 0.697±0.36 1.247±0.20 0.817±0.31 0.880±0.19 1.248±0.85 0.604±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007N3 CIL_0007N3_0002 UCNEbase 1:138385353-139100523
CIL_0005VR CIL_0005VR_0002 CGP 1:138851979-139176043

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0017112 IEA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IEA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000235453 DENND1B-004 protein_coding Homo_sapiens 0 1404
ENST00000294737 DENND1B-008 nonsense_mediated_decay Homo_sapiens 0 1295
ENST00000294738 DENND1B-012 processed_transcript Homo_sapiens 0 363
ENST00000367396 DENND1B-003 protein_coding Homo_sapiens 0 942
ENST00000391979 DENND1B-001 protein_coding Homo_sapiens 0 959
ENST00000422998 DENND1B-010 protein_coding Homo_sapiens 0 494
ENST00000496935 DENND1B-007 retained_intron Homo_sapiens 0 697
ENST00000620048 DENND1B-201 protein_coding Homo_sapiens 0 1687

Loading