C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6 kinase polypeptide 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000168974 Rps6ka1-003 ENSMUSG00000003644 10090 - 4:133847294-133874731 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000168974
Transcript ID Adipose Bladder Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000168974 3.428±0.52 2.617±0.58 3.158±0.32 1.639±0.28 7.874±3.90 0.824±0.07 3.869±1.02 6.047±0.00 3.840±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000287 IEA magnesium ion binding
GO:0004674 IEA protein serine/threonine kinase activity
GO:0004712 ISO protein serine/threonine/tyrosine kinase activity
GO:0005524 IEA ATP binding
GO:0005819 IDA spindle
GO:0006468 IEA protein phosphorylation
GO:0035556 IEA intracellular signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000366866 RPS6KA1-016 nonsense_mediated_decay Homo_sapiens 0 542
ENST00000374163 RPS6KA1-002 nonsense_mediated_decay Homo_sapiens 0 2333
ENST00000374166 RPS6KA1-010 protein_coding Homo_sapiens 0 1871
ENST00000374168 RPS6KA1-001 protein_coding Homo_sapiens 0 2822
ENST00000403732 RPS6KA1-007 protein_coding Homo_sapiens 0 375
ENST00000474934 RPS6KA1-004 retained_intron Homo_sapiens 0 309
ENST00000488985 RPS6KA1-005 processed_transcript Homo_sapiens 2e-39 165
ENST00000524436 RPS6KA1-014 retained_intron Homo_sapiens 0 374
ENST00000525525 RPS6KA1-012 nonsense_mediated_decay Homo_sapiens 9.80909e-45 183
ENST00000525582 RPS6KA1-018 retained_intron Homo_sapiens 0 230
ENST00000526040 RPS6KA1-013 nonsense_mediated_decay Homo_sapiens 0 324
ENST00000526792 RPS6KA1-009 protein_coding Homo_sapiens 0 2822
ENST00000527264 RPS6KA1-019 retained_intron Homo_sapiens 0 457
ENST00000529454 RPS6KA1-015 protein_coding Homo_sapiens 0 525
ENST00000530003 RPS6KA1-003 protein_coding Homo_sapiens 0 2915
ENST00000530305 RPS6KA1-020 retained_intron Homo_sapiens 0 327
ENST00000530607 RPS6KA1-017 retained_intron Homo_sapiens 0 370
ENST00000531113 RPS6KA1-011 retained_intron Homo_sapiens 0 2386
ENST00000531382 RPS6KA1-008 protein_coding Homo_sapiens 0 2819

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