C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transforming growth factor, beta 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169009 Tgfb1-003 ENSMUSG00000002603 10090 + 7:25688927-25697213 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENSMUST00000169009
Transcript ID Placenta Testis
ENSMUST00000169009 6.604±0.00 0.482±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TR CIL_0008TR_0002 VISTA 7:25324415-25925712
CIL_0006US CIL_0006US_0002 CGP 7:25681158-25705077
CIL_00078X CIL_00078X_0002 CGP 7:25687002-25719088

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0001501 TAS skeletal system development
GO:0001775 IDA cell activation
GO:0002028 IDA regulation of sodium ion transport
GO:0002513 IMP tolerance induction to self antigen
GO:0005160 TAS transforming growth factor beta receptor binding
GO:0005515 IPI protein binding
GO:0005578 IDA proteinaceous extracellular matrix
GO:0005615 IDA extracellular space
GO:0006468 IDA protein phosphorylation
GO:0006874 IMP cellular calcium ion homeostasis
GO:0006952 TAS defense response
GO:0006954 IMP inflammatory response
GO:0007179 IDA transforming growth factor beta receptor signaling pathway
GO:0007492 IDA endoderm development
GO:0007519 TAS skeletal muscle tissue development
GO:0008283 IDA cell proliferation
GO:0008284 IDA positive regulation of cell proliferation
GO:0008285 TAS negative regulation of cell proliferation
GO:0008354 IDA germ cell migration
GO:0009887 TAS organ morphogenesis
GO:0010628 IDA positive regulation of gene expression
GO:0010718 IDA positive regulation of epithelial to mesenchymal transition
GO:0016202 IDA regulation of striated muscle tissue development
GO:0030217 IMP T cell differentiation
GO:0030279 IDA negative regulation of ossification
GO:0030879 IDA mammary gland development
GO:0031012 IDA extracellular matrix
GO:0031065 IDA positive regulation of histone deacetylation
GO:0032943 IMP mononuclear cell proliferation
GO:0035066 IDA positive regulation of histone acetylation
GO:0042110 IMP T cell activation
GO:0042127 IDA regulation of cell proliferation
GO:0042130 IMP negative regulation of T cell proliferation
GO:0042306 IDA regulation of protein import into nucleus
GO:0042482 IDA positive regulation of odontogenesis
GO:0043011 IMP myeloid dendritic cell differentiation
GO:0043029 IMP T cell homeostasis
GO:0045066 IDA regulatory T cell differentiation
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0048298 ISO positive regulation of isotype switching to IgA isotypes
GO:0048535 IMP lymph node development
GO:0050868 IMP negative regulation of T cell activation
GO:0051098 IDA regulation of binding
GO:0051101 IDA regulation of DNA binding
GO:0051152 ISO positive regulation of smooth muscle cell differentiation
GO:0060744 IMP mammary gland branching involved in thelarche
GO:0060751 IMP branch elongation involved in mammary gland duct branching
GO:0060762 IGI regulation of branching involved in mammary gland duct morphogenesis
GO:0061035 IDA regulation of cartilage development
GO:0070306 IMP lens fiber cell differentiation
GO:0071158 IDA positive regulation of cell cycle arrest
GO:0071363 IDA cellular response to growth factor stimulus
GO:0071560 IDA cellular response to transforming growth factor beta stimulus
GO:1900182 IGI positive regulation of protein localization to nucleus
GO:2000249 IGI regulation of actin cytoskeleton reorganization

Homologs

No Homologs available.

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