C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169273 Ndst1-201 ENSMUSG00000054008 10090 - 18:60685978-60713389 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000169273
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000169273 6.335±2.99 23.805±6.59 21.338±0.00 10.196±3.49 9.920±2.77 4.123±0.43 11.949±0.41 10.073±2.29 34.189±7.24 2.277±0.45 26.032±8.41 4.255±3.01 1.011±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0002 VISTA 18:60604549-61207221

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000165 IMP MAPK cascade
GO:0000271 IMP polysaccharide biosynthetic process
GO:0005794 IEA Golgi apparatus
GO:0006476 TAS protein deacetylation
GO:0006477 TAS protein sulfation
GO:0006954 IEA inflammatory response
GO:0007224 IGI smoothened signaling pathway
GO:0007585 IMP respiratory gaseous exchange
GO:0008146 IDA sulfotransferase activity
GO:0008543 IMP fibroblast growth factor receptor signaling pathway
GO:0009887 IMP organ morphogenesis
GO:0015012 IEA heparan sulfate proteoglycan biosynthetic process
GO:0015016 TAS [heparan sulfate]-glucosamine N-sulfotransferase activity
GO:0016021 IEA integral component of membrane
GO:0019213 IDA deacetylase activity
GO:0030203 IMP glycosaminoglycan metabolic process
GO:0030210 IEA heparin biosynthetic process
GO:0030900 IGI forebrain development
GO:0030901 IGI midbrain development
GO:0048702 IMP embryonic neurocranium morphogenesis
GO:0048703 IMP embryonic viscerocranium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000085748 NDST1 (2 of 2)-201 protein_coding Danio_rerio 0 514
ENST00000261797 NDST1-002 protein_coding Homo_sapiens 0 4000
ENST00000299641 NDST2-201 protein_coding Homo_sapiens 0 874
ENST00000309979 NDST2-003 protein_coding Homo_sapiens 0 874
ENST00000519157 NDST1-008 protein_coding Homo_sapiens 0 630
ENST00000521752 NDST1-006 processed_transcript Homo_sapiens 0 241
ENST00000523767 NDST1-001 protein_coding Homo_sapiens 0 2889
ENST00000603027 RP11-574K11.31-001 nonsense_mediated_decay Homo_sapiens 0 874

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