C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000169623 Arhgef16-201 ENSMUSG00000029032 10090 - 4:154278754-154301663 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastHeartLiverMuscleOvaryPlacentaTestisENSMUST00000169623
Transcript ID Adipose Adrenal Bladder Brain Breast Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000169623 0.175±0.03 0.020±0.00 1.617±0.00 0.105±0.00 0.770±0.00 0.058±0.00 0.603±0.17 0.046±0.00 1.299±0.36 14.875±12.96 0.205±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099V CIL_00099V_0002 VISTA 4:154093365-154697126
CIL_0007TB CIL_0007TB_0002 VISTA 4:154156294-154757167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 ISS Rho guanyl-nucleotide exchange factor activity
GO:0005737 IEA cytoplasm
GO:0032863 ISS activation of Rac GTPase activity
GO:0060326 ISS cell chemotaxis
GO:0090004 ISS positive regulation of establishment of protein localization to plasma membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000378371 ARHGEF16-003 protein_coding Homo_sapiens 0 1382
ENST00000378373 ARHGEF16-002 protein_coding Homo_sapiens 0 1413
ENST00000378378 ARHGEF16-001 protein_coding Homo_sapiens 0 1707
ENST00000418137 ARHGEF16-007 protein_coding Homo_sapiens 0 411
ENST00000445297 ARHGEF16-005 protein_coding Homo_sapiens 0 488
ENST00000464620 ARHGEF16-006 retained_intron Homo_sapiens 0 287
ENST00000485984 ARHGEF16-004 retained_intron Homo_sapiens 0 582

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