C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, non-receptor type 21
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170188 Ptpn21-202 ENSMUSG00000021009 10090 - 12:98676741-98737405 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000170188
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000170188 3.277±1.25 3.689±1.48 5.107±0.02 1.082±0.53 2.904±1.38 2.311±1.08 4.843±0.79 5.438±1.73 1.932±0.82 8.154±2.82 7.449±0.94 7.025±3.76 3.679±1.78 1.004±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004KP CIL_0004KP_0002 CGP 12:98628157-98737405
CIL_0004KQ CIL_0004KQ_0002 CGP 12:98676741-98787774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005856 IEA cytoskeleton
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328736 PTPN21-201 protein_coding Homo_sapiens 0 3480
ENST00000536337 PTPN21-003 nonsense_mediated_decay Homo_sapiens 0 3240
ENST00000554270 PTPN21-004 retained_intron Homo_sapiens 0 2798
ENST00000554628 PTPN21-002 processed_transcript Homo_sapiens 0 1138
ENST00000555243 PTPN21-005 protein_coding Homo_sapiens 0 717
ENST00000556406 SPATA7-021 protein_coding Homo_sapiens 0 195
ENST00000556564 PTPN21-001 protein_coding Homo_sapiens 0 3498
ENST00000557249 PTPN21-006 retained_intron Homo_sapiens 0 477

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