C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peptidoglycan recognition protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170392 Pglyrp2-202 ENSMUSG00000079563 10090 - 17:32413100-32420975 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000170392
Transcript ID Adipose Adrenal Bladder Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000170392 0.048±0.00 0.311±0.06 0.032±0.00 4.857±1.93 0.627±0.26 0.291±0.15 45.599±39.13 0.283±0.12 0.222±0.18 0.011±0.00 0.287±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019W CIL_00019W_0002 CGP 17:32390659-32424167
CIL_0001MH CIL_0001MH_0002 CGP 17:32413100-32492479

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002221 IEA pattern recognition receptor signaling pathway
GO:0008270 IEA zinc ion binding
GO:0008745 IEA N-acetylmuramoyl-L-alanine amidase activity
GO:0009253 IEA peptidoglycan catabolic process
GO:0016019 ISS peptidoglycan receptor activity
GO:0016020 IEA membrane
GO:0016045 ISS detection of bacterium
GO:0032689 IMP negative regulation of interferon-gamma production
GO:0032827 IMP negative regulation of natural killer cell differentiation involved in immune response
GO:0042834 ISS peptidoglycan binding
GO:0044117 IMP growth of symbiont in host
GO:0050727 IMP regulation of inflammatory response
GO:0050830 ISS defense response to Gram-positive bacterium
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000292609 PGLYRP2-002 protein_coding Homo_sapiens 0 822
ENST00000340880 PGLYRP2-001 protein_coding Homo_sapiens 0 822

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