C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: peptidoglycan recognition protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340880 PGLYRP2-001 ENSG00000161031 9606 - 19:15468645-15479852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyOvaryENST00000340880
Transcript ID Adrenal Brain Breast Kidney Ovary
ENST00000340880 0.126±0.00 0.025±0.00 0.080±0.04 5.118±0.00 0.028±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019W CIL_00019W_0001 CGP 19:15451624-15498956
CIL_0001MH CIL_0001MH_0001 CGP 19:15468645-15552317

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001519 NAS peptide amidation
GO:0002221 IDA pattern recognition receptor signaling pathway
GO:0005622 NAS intracellular
GO:0008270 IEA zinc ion binding
GO:0008745 IEA:TAS N-acetylmuramoyl-L-alanine amidase activity
GO:0009253 IEA peptidoglycan catabolic process
GO:0016019 IDA peptidoglycan receptor activity
GO:0016020 NAS membrane
GO:0016045 IDA detection of bacterium
GO:0032689 IEA negative regulation of interferon-gamma production
GO:0032827 IEA negative regulation of natural killer cell differentiation involved in immune response
GO:0042834 IDA peptidoglycan binding
GO:0044117 IEA growth of symbiont in host
GO:0045087 NAS innate immune response
GO:0050727 IEA regulation of inflammatory response
GO:0050830 IDA defense response to Gram-positive bacterium
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114455 Pglyrp2-201 protein_coding Mus_musculus 0 822
ENSMUST00000170392 Pglyrp2-202 protein_coding Mus_musculus 0 822

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