C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: beclin 1, autophagy related
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000170502 Becn1-013 ENSMUSG00000035086 10090 - 11:101295907-101302249 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastOvaryENSMUST00000170502
Transcript ID Breast Ovary
ENSMUST00000170502 33.276±1.57 55.190±12.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005SB CIL_0005SB_0002 CGP 11:101277968-101296317
CIL_0005S8 CIL_0005S8_0002 CGP 11:101279012-101302286
CIL_0005S9 CIL_0005S9_0002 CGP 11:101285952-101323537

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005802 IDA trans-Golgi network
GO:0005856 ISS cytoskeleton
GO:0006914 IDA autophagy
GO:0007040 IMP lysosome organization
GO:0008285 IDA negative regulation of cell proliferation
GO:0016020 ISS membrane
GO:0016023 IDA cytoplasmic membrane-bounded vesicle
GO:0016239 IGI positive regulation of macroautophagy
GO:0043234 IDA protein complex
GO:0045335 IDA phagocytic vesicle
GO:0048666 IMP neuron development
GO:0050435 IMP beta-amyloid metabolic process
GO:0050790 IMP regulation of catalytic activity
GO:0051707 IDA response to other organism

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000361523 BECN1-002 protein_coding Homo_sapiens 0 425
ENST00000438274 BECN1-003 protein_coding Homo_sapiens 0 520
ENST00000543382 BECN1-004 retained_intron Homo_sapiens 0 540
ENST00000585515 BECN1-011 retained_intron Homo_sapiens 0 455
ENST00000589636 BECN1-008 protein_coding Homo_sapiens 0 272
ENST00000590099 BECN1-001 protein_coding Homo_sapiens 0 510
ENST00000591085 BECN1-010 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000591307 BECN1-007 retained_intron Homo_sapiens 0 324
ENST00000593112 BECN1-006 retained_intron Homo_sapiens 0 414
ENST00000593205 BECN1-012 protein_coding Homo_sapiens 0 497
ENST00000612631 BECN1-009 protein_coding Homo_sapiens 0 202
ENST00000617806 BECN1-005 retained_intron Homo_sapiens 0 540

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