C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: apolipoprotein B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171239 Apob-005 ENSMUSG00000020609 10090 + 12:8012359-8016835 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000171239
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000171239 0.011±0.00 0.129±0.02 0.029±0.00 0.097±0.00 0.709±0.17 1.521±0.41 0.056±0.04 8.625±0.83 164.348±87.13 0.133±0.03 0.033±0.02 0.257±0.19 163.436±182.61 0.015±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ID CIL_0007ID_0002 CGP 12:7977648-8285758

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0005783 IDA endoplasmic reticulum
GO:0006629 IGI lipid metabolic process
GO:0006642 IMP triglyceride mobilization
GO:0007283 IMP spermatogenesis
GO:0007399 IMP nervous system development
GO:0009566 IMP fertilization
GO:0009791 IMP post-embryonic development
GO:0016042 IMP lipid catabolic process
GO:0019433 IMP triglyceride catabolic process
GO:0030301 IMP cholesterol transport
GO:0030317 IMP sperm motility
GO:0033344 IGI cholesterol efflux
GO:0042157 IMP lipoprotein metabolic process
GO:0042158 IGI lipoprotein biosynthetic process
GO:0042159 IGI lipoprotein catabolic process
GO:0042632 IGI cholesterol homeostasis
GO:0042953 IGI lipoprotein transport
GO:0045540 IMP regulation of cholesterol biosynthetic process
GO:0048844 IGI artery morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000233242 APOB-001 protein_coding Homo_sapiens 0 379
ENST00000616098 APOB-201 protein_coding Homo_sapiens 0 374

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