C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cDNA sequence BC037034
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000171557 BC037034-002 ENSMUSG00000091964 10090 - 5:138259659-138263990 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastHeartLungMuscleOvaryENSMUST00000171557
Transcript ID Adipose Adrenal Breast Heart Lung Muscle Ovary
ENSMUST00000171557 6.875±1.10 8.593±1.91 5.987±1.19 1.364±0.00 5.218±0.49 0.599±0.04 8.556±1.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QI CIL_0008QI_0002 VISTA 5:137705744-138314172
CIL_0002JK CIL_0002JK_0002 CGP 5:138255608-138264046
CIL_0005BN CIL_0005BN_0003 CGP 5:138259658-138272840

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000316937 C7orf43-001 protein_coding Homo_sapiens 0 776
ENST00000394035 C7orf43-007 protein_coding Homo_sapiens 0 776
ENST00000419037 C7orf43-004 nonsense_mediated_decay Homo_sapiens 0 2043
ENST00000419841 C7orf43-005 protein_coding Homo_sapiens 0 713
ENST00000448720 C7orf43-006 nonsense_mediated_decay Homo_sapiens 0 726
ENST00000456769 C7orf43-008 protein_coding Homo_sapiens 0 774
ENST00000457641 C7orf43-010 protein_coding Homo_sapiens 0 776
ENST00000470260 C7orf43-014 retained_intron Homo_sapiens 0 523
ENST00000472061 C7orf43-011 processed_transcript Homo_sapiens 0 302
ENST00000490633 LAMTOR4-012 protein_coding Homo_sapiens 0 228
ENST00000498638 C7orf43-012 processed_transcript Homo_sapiens 0 451
ENST00000612870 C7orf43-201 protein_coding Homo_sapiens 0 767

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