C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0005BN_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000078891-ENSDARG00000079712 CGP 7955 7:27492159-27534119
GeneTranscriptPositionBiotype
ENSDARG00000078891 (C7H7orf43)
chromosome 7 open reading frame 43 		ENSDART00000109268 (C7H7orf43-201) 27492159-27515536 protein_coding
ENSDARG00000079712 (GAL3ST4)
galactose-3-O-sulfotransferase 4 		ENSDART00000111494 (GAL3ST4-201) 27519620-27534119 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0005BN_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000146826-ENSG00000197093 CGP 9606 7:100154420-100168750
GeneTranscriptPositionBiotype
ENSG00000146826 (C7orf43)
chromosome 7 open reading frame 43 		ENST00000316937 (C7orf43-001) 100154420-100158685 protein_coding
ENST00000394035 (C7orf43-007) 100154420-100156440 protein_coding
ENST00000419037 (C7orf43-004) 100154420-100158659 nonsense_mediated_decay
ENST00000419841 (C7orf43-005) 100154824-100157759 protein_coding
ENST00000448720 (C7orf43-006) 100154424-100157139 nonsense_mediated_decay
ENST00000456769 (C7orf43-008) 100154424-100158715 protein_coding
ENST00000457641 (C7orf43-010) 100154420-100158020 protein_coding
ENST00000470260 (C7orf43-014) 100154475-100155674 retained_intron
ENST00000472061 (C7orf43-011) 100156939-100157452 processed_transcript
ENST00000498638 (C7orf43-012) 100156265-100157199 processed_transcript
ENST00000612870 (C7orf43-201) 100154424-100156440 protein_coding
ENSG00000188186 (LAMTOR4)
late endosomal/lysosomal adaptor, MAPK and MTOR activator 4 		ENST00000341942 (LAMTOR4-001) 100148907-100154203 protein_coding
ENST00000441173 (LAMTOR4-005) 100148938-100154010 protein_coding
ENST00000460732 (LAMTOR4-003) 100148913-100154203 protein_coding
ENST00000466498 (LAMTOR4-011) 100149359-100153898 protein_coding
ENST00000468582 (LAMTOR4-007) 100148978-100154212 protein_coding
ENST00000473459 (LAMTOR4-009) 100149357-100154203 protein_coding
ENST00000474141 (LAMTOR4-002) 100148912-100154203 protein_coding
ENST00000474831 (LAMTOR4-004) 100148934-100154203 nonsense_mediated_decay
ENST00000488241 (LAMTOR4-008) 100148994-100154203 protein_coding
ENST00000488338 (LAMTOR4-010) 100152680-100154203 retained_intron
ENST00000490633 (LAMTOR4-012) 100153486-100155944 protein_coding
ENST00000494136 (LAMTOR4-006) 100148938-100149887 retained_intron
ENSG00000197093 (GAL3ST4)
galactose-3-O-sulfotransferase 4 		ENST00000360039 (GAL3ST4-001) 100159245-100168750 protein_coding
ENST00000411994 (GAL3ST4-004) 100159816-100167230 protein_coding
ENST00000413800 (GAL3ST4-003) 100159244-100167284 protein_coding
ENST00000423751 (GAL3ST4-002) 100159646-100168613 protein_coding
ENST00000460995 (GAL3ST4-006) 100166599-100168135 processed_transcript
ENST00000482469 (GAL3ST4-007) 100166533-100168069 processed_transcript
ENST00000495882 (GAL3ST4-005) 100159244-100168112 retained_intron
ENST00000498000 (GAL3ST4-008) 100160729-100168142 processed_transcript

Homo sapiens Ensembl (GRCh38)

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CIL_0005BN_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000091964-ENSMUSG00000075593 CGP 10090 5:138259658-138272840
GeneTranscriptPositionBiotype
ENSMUSG00000029510 (Gpc2)
glypican 2 (cerebroglycan) 		ENSMUST00000014089 (Gpc2-004) 138273660-138279965 protein_coding
ENSMUST00000159067 (Gpc2-007) 138264952-138279958 nonsense_mediated_decay
ENSMUST00000159350 (Gpc2-008) 138276641-138279963 processed_transcript
ENSMUST00000159689 (Gpc2-005) 138273657-138279962 retained_intron
ENSMUST00000161055 (Gpc2-006) 138275528-138278237 retained_intron
ENSMUST00000161827 (Gpc2-001) 138273655-138280005 protein_coding
ENSMUST00000161984 (Gpc2-002) 138273657-138279982 nonsense_mediated_decay
ENSMUST00000162909 (Gpc2-003) 138273657-138279985 retained_intron
ENSMUSG00000036948 (BC037034)
cDNA sequence BC037034 		ENSMUST00000048421 (BC037034-001) 138259656-138263994 protein_coding
ENSMUST00000159123 (BC037034-004) 138259659-138263990 nonsense_mediated_decay
ENSMUST00000159146 (BC037034-008) 138260105-138260945 protein_coding
ENSMUST00000159534 (BC037034-005) 138259660-138264033 retained_intron
ENSMUST00000159649 (BC037034-003) 138259658-138263340 protein_coding
ENSMUST00000159872 (BC037034-006) 138262253-138263138 retained_intron
ENSMUST00000161604 (BC037034-002) 138259660-138264046 protein_coding
ENSMUST00000162632 (BC037034-007) 138261570-138262194 retained_intron
ENSMUSG00000075593 (Gal3st4)
galactose-3-O-sulfotransferase 4 		ENSMUST00000100530 (Gal3st4-003) 138264925-138272754 protein_coding
ENSMUST00000161279 (Gal3st4-001) 138264938-138272801 protein_coding
ENSMUST00000161647 (Gal3st4-002) 138264921-138272840 protein_coding
ENSMUST00000161665 (Gal3st4-005) 138270993-138272749 protein_coding
ENSMUST00000162557 (Gal3st4-004) 138264938-138272801 processed_transcript
ENSMUSG00000085227 (6330418K02Rik)
RIKEN cDNA 6330418K02 gene 		ENSMUST00000124298 (6330418K02Rik-001) 138264043-138266661 processed_transcript
ENSMUST00000125662 (6330418K02Rik-002) 138264069-138266661 processed_transcript
ENSMUST00000138911 (6330418K02Rik-005) 138265544-138266083 processed_transcript
ENSMUST00000141454 (6330418K02Rik-003) 138264054-138266332 processed_transcript
ENSMUST00000144460 (6330418K02Rik-004) 138264108-138266229 processed_transcript
ENSMUSG00000091964 (BC037034)
cDNA sequence BC037034 		ENSMUST00000163268 (BC037034-005) 138259660-138264046 protein_coding
ENSMUST00000164132 (BC037034-006) 138260105-138260945 processed_transcript
ENSMUST00000164203 (BC037034-001) 138259659-138263994 protein_coding
ENSMUST00000167840 (BC037034-003) 138259658-138263340 protein_coding
ENSMUST00000170479 (BC037034-004) 138259660-138264033 retained_intron
ENSMUST00000171557 (BC037034-002) 138259659-138263990 nonsense_mediated_decay

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BN_0001ENSDARG00000078891ENSDART00000109268ENSDARG00000079712ENSDART00000111494CIL_0005BN_0002ENSG00000146826ENST00000316937ENST00000394035ENST00000419037ENST00000419841ENST00000448720ENST00000456769ENST00000457641ENST00000470260ENST00000472061ENST00000498638ENST00000612870ENSG00000188186ENST00000341942ENST00000441173ENST00000460732ENST00000466498ENST00000468582ENST00000473459ENST00000474141ENST00000474831ENST00000488241ENST00000488338ENST00000490633ENST00000494136ENSG00000197093ENST00000360039ENST00000411994ENST00000413800ENST00000423751ENST00000460995ENST00000482469ENST00000495882ENST00000498000CIL_0005BN_0003ENSMUSG00000029510ENSMUST00000014089ENSMUST00000159067ENSMUST00000159350ENSMUST00000159689ENSMUST00000161055ENSMUST00000161827ENSMUST00000161984ENSMUST00000162909ENSMUSG00000036948ENSMUST00000048421ENSMUST00000159123ENSMUST00000159146ENSMUST00000159534ENSMUST00000159649ENSMUST00000159872ENSMUST00000161604ENSMUST00000162632ENSMUSG00000075593ENSMUST00000100530ENSMUST00000161279ENSMUST00000161647ENSMUST00000161665ENSMUST00000162557ENSMUSG00000085227ENSMUST00000124298ENSMUST00000125662ENSMUST00000138911ENSMUST00000141454ENSMUST00000144460ENSMUSG00000091964ENSMUST00000163268ENSMUST00000164132ENSMUST00000164203ENSMUST00000167840ENSMUST00000170479ENSMUST00000171557
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0005BN_0001ENSDARG00000078891ENSDART00000109268ENSDARG00000079712ENSDART00000111494CIL_0005BN_0002ENSG00000146826ENST00000316937ENST00000419841ENST00000457641ENSG00000188186ENST00000341942ENST00000441173ENST00000468582ENST00000474141ENST00000474831ENSG00000197093ENST00000360039ENST00000411994ENST00000413800ENST00000423751ENST00000460995ENST00000495882ENST00000498000CIL_0005BN_0003ENSMUSG00000029510ENSMUST00000014089ENSMUST00000159689ENSMUST00000161055ENSMUST00000161827ENSMUST00000162909ENSMUSG00000036948ENSMUST00000048421ENSMUST00000159534ENSMUST00000161604ENSMUSG00000075593ENSMUST00000100530ENSMUST00000161647ENSMUST00000162557ENSMUSG00000085227ENSMUST00000124298ENSMUSG00000091964ENSMUST00000163268ENSMUST00000164203ENSMUST00000167840ENSMUST00000170479ENSMUST00000171557
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000078891 ENSDART00000109268 N/A N/A N/A 6.220±1.67 N/A N/A 0.870±0.44 1.214±0.45 0.069±0.00 N/A 0.292±0.00 N/A N/A N/A
ENSDARG00000079712 ENSDART00000111494 N/A N/A N/A 18.069±3.64 N/A N/A 0.201±0.05 0.389±0.11 0.013±0.00 N/A 0.570±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000146826 ENST00000316937 N/A N/A N/A N/A N/A 1.912±0.00 N/A 1.072±0.00 1.828±0.51 1.043±0.00 N/A 8.362±0.00 7.814±0.91 15.634±7.24
ENST00000394035 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419037 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000419841 N/A N/A N/A 6.431±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 14.827±0.00
ENST00000448720 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000456769 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000457641 N/A N/A N/A N/A N/A 2.178±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000470260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000472061 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000498638 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000612870 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000188186 ENST00000341942 61.448±0.00 153.944±0.00 14.697±0.00 53.310±1.24 53.252±32.54 67.327±39.57 22.773±11.86 50.958±29.45 16.283±2.33 51.744±36.83 32.496±0.66 120.478±73.82 111.059±21.01 67.349±12.03
ENST00000441173 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.802±0.00 N/A N/A N/A N/A
ENST00000460732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000466498 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000468582 N/A N/A N/A 20.046±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 22.541±0.00
ENST00000473459 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000474141 N/A N/A N/A N/A N/A N/A 15.215±0.00 44.994±0.00 N/A 34.304±0.00 N/A N/A N/A N/A
ENST00000474831 N/A N/A N/A N/A N/A N/A N/A N/A 8.849±0.00 N/A N/A N/A N/A N/A
ENST00000488241 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488338 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000490633 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000494136 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000197093 ENST00000360039 1.075±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.376±0.00 3.039±0.00 0.904±0.00 1.522±0.00
ENST00000411994 N/A N/A N/A N/A 1.371±0.00 N/A 0.060±0.00 0.913±0.00 0.119±0.05 0.768±0.00 0.132±0.00 2.538±1.81 N/A 0.649±0.00
ENST00000413800 0.963±0.00 1.220±0.00 N/A 0.622±0.00 1.249±0.68 1.841±0.00 0.379±0.00 0.273±0.00 N/A 0.896±0.00 N/A 2.911±1.31 3.479±1.22 0.765±0.00
ENST00000423751 N/A N/A N/A 0.360±0.00 0.306±0.00 0.802±0.00 0.215±0.00 N/A 0.332±0.25 N/A N/A 2.342±0.44 2.056±0.00 N/A
ENST00000460995 N/A N/A 1.927±0.00 0.612±0.00 N/A 1.145±0.00 N/A N/A 0.876±0.00 N/A N/A N/A N/A N/A
ENST00000482469 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000495882 N/A 0.262±0.00 N/A N/A N/A N/A 0.069±0.00 0.110±0.00 N/A 0.143±0.07 0.085±0.00 0.787±0.00 N/A 0.813±0.00
ENST00000498000 N/A N/A N/A 0.992±0.00 N/A N/A N/A N/A N/A 1.646±0.00 N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029510 ENSMUST00000014089 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.840±0.00 N/A
ENSMUST00000159067 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159350 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159689 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.823±0.14 N/A
ENSMUST00000161055 N/A N/A N/A 110.833±18.90 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161827 N/A N/A 4.777±0.00 148.545±18.06 N/A N/A N/A N/A N/A N/A N/A N/A 3.616±0.63 6.005±2.78
ENSMUST00000161984 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162909 5.449±0.09 N/A 4.921±1.48 49.504±9.64 N/A N/A N/A N/A N/A N/A N/A 3.176±0.59 2.131±0.56 0.382±0.00
ENSMUSG00000036948 ENSMUST00000048421 N/A N/A N/A N/A 5.076±1.44 6.050±0.00 N/A N/A 6.191±1.15 3.535±0.00 0.777±0.00 7.548±0.00 7.446±1.75 N/A
ENSMUST00000159123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159146 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159534 5.072±2.21 N/A 5.787±1.83 N/A 3.500±0.65 N/A 0.668±0.00 1.963±0.00 4.937±1.05 5.181±0.52 N/A 8.422±0.91 2.794±0.52 N/A
ENSMUST00000159649 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000159872 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161604 N/A N/A N/A 4.228±0.00 5.471±0.00 N/A 2.295±0.17 6.567±0.00 2.877±1.40 N/A N/A 11.737±1.94 N/A 9.226±5.15
ENSMUST00000162632 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000075593 ENSMUST00000100530 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.240±0.00 N/A N/A N/A
ENSMUST00000161279 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000161647 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.537±0.00 N/A N/A N/A
ENSMUST00000161665 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000162557 N/A N/A N/A 2.963±0.00 N/A N/A N/A N/A N/A N/A 0.743±0.00 N/A 3.008±0.00 1.303±0.00
ENSMUSG00000085227 ENSMUST00000124298 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 9.051±0.00 N/A
ENSMUST00000125662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138911 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000141454 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144460 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000091964 ENSMUST00000163268 N/A N/A N/A N/A N/A 13.598±0.00 N/A N/A N/A N/A N/A N/A N/A 8.515±0.00
ENSMUST00000164132 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000164203 3.012±0.00 N/A N/A N/A 4.886±1.18 7.572±1.03 2.063±0.00 4.492±0.61 3.153±1.96 6.552±4.03 0.896±0.00 7.908±0.00 5.836±1.15 11.539±1.28
ENSMUST00000167840 8.166±1.26 N/A 12.209±3.58 N/A 8.727±1.48 9.383±0.79 1.914±0.23 5.607±1.79 7.618±4.89 6.037±1.77 1.355±0.47 14.253±3.94 8.406±2.38 10.461±1.81
ENSMUST00000170479 N/A N/A N/A 1.714±0.00 N/A 4.153±0.35 N/A 1.731±0.30 N/A N/A 0.395±0.08 6.726±2.08 N/A 0.729±0.00
ENSMUST00000171557 6.875±1.10 8.593±1.91 N/A N/A 5.987±1.19 N/A 1.364±0.00 N/A N/A 5.218±0.49 0.599±0.04 8.556±1.18 N/A N/A

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