C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ral GEF with PH domain and SH3 binding motif 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172057 Ralgps2-001 ENSMUSG00000026594 10090 - 1:156804166-156939602 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172057
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172057 0.289±0.00 0.615±0.14 1.263±0.00 3.130±0.66 1.932±1.13 2.523±0.60 0.914±0.36 1.685±0.53 1.795±0.16 0.080±0.03 2.201±0.85 1.129±0.18 3.572±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000656 CIL_000656_0002 CGP 1:156678532-156939626
CIL_0001WH CIL_0001WH_0003 CGP 1:156804166-156939626

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005085 IEA guanyl-nucleotide exchange factor activity
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0005886 IEA plasma membrane
GO:0007264 IEA small GTPase mediated signal transduction
GO:0008150 ND biological_process
GO:0043547 IEA positive regulation of GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324778 RALGPS2-003 protein_coding Homo_sapiens 0 1221
ENST00000326071 NOL4L-003 protein_coding Homo_sapiens 0.0001 55
ENST00000367634 RALGPS2-201 protein_coding Homo_sapiens 0 1266
ENST00000367635 RALGPS2-002 protein_coding Homo_sapiens 0 2207
ENST00000475781 NOL4L-006 processed_transcript Homo_sapiens 0.0001 55
ENST00000477383 RALGPS2-007 processed_transcript Homo_sapiens 0 569
ENST00000478871 RALGPS2-008 retained_intron Homo_sapiens 0 518
ENST00000480743 RALGPS2-006 retained_intron Homo_sapiens 0 442
ENST00000495034 RALGPS2-001 retained_intron Homo_sapiens 0 972

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