C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: myosin XVIIIA
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000172303 Myo18a-015 ENSMUSG00000000631 10090 + 11:77801350-77865980 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000172303
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000172303 1.207±0.00 4.016±0.51 3.357±0.33 5.557±1.10 4.599±2.18 7.097±1.04 9.633±1.34 5.884±1.68 1.919±0.58 4.693±0.00 13.822±3.37 3.530±0.85 1.991±0.00 1.212±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 ISS Golgi membrane
GO:0003774 IEA motor activity
GO:0005524 ISS ATP binding
GO:0005802 ISS trans-Golgi network
GO:0005856 IDA cytoskeleton
GO:0007030 ISS Golgi organization
GO:0008152 IEA metabolic process
GO:0016459 IEA myosin complex
GO:0016477 ISS cell migration
GO:0031032 ISS actomyosin structure organization
GO:0043531 ISS ADP binding
GO:0048194 ISS Golgi vesicle budding
GO:0050714 ISS positive regulation of protein secretion

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000153951 myo18ab-001 protein_coding Danio_rerio 0 1546
ENSDART00000088648 myo18ab-201 protein_coding Danio_rerio 0 1537
ENST00000359450 TIAF1-001 protein_coding Homo_sapiens 0 366
ENST00000527372 MYO18A-001 protein_coding Homo_sapiens 0 5956
ENST00000528322 MYO18A-012 retained_intron Homo_sapiens 0 209
ENST00000528564 MYO18A-008 protein_coding Homo_sapiens 0 640
ENST00000529578 MYO18A-006 processed_transcript Homo_sapiens 0 1315
ENST00000529889 MYO18A-017 retained_intron Homo_sapiens 0 623
ENST00000530254 MYO18A-026 nonsense_mediated_decay Homo_sapiens 0 6486
ENST00000530557 MYO18A-014 retained_intron Homo_sapiens 0 793
ENST00000531253 MYO18A-002 protein_coding Homo_sapiens 0 6486
ENST00000531267 MYO18A-011 processed_transcript Homo_sapiens 0 207
ENST00000531438 MYO18A-021 retained_intron Homo_sapiens 0 403
ENST00000531892 MYO18A-018 processed_transcript Homo_sapiens 0 516
ENST00000532143 MYO18A-023 retained_intron Homo_sapiens 0 712
ENST00000532867 MYO18A-020 processed_transcript Homo_sapiens 2e-33 145
ENST00000533112 MYO18A-003 protein_coding Homo_sapiens 0 4521
ENST00000533420 MYO18A-010 processed_transcript Homo_sapiens 2e-40 169
ENST00000546105 MYO18A-016 processed_transcript Homo_sapiens 0 1125
ENST00000585573 MYO18A-034 processed_transcript Homo_sapiens 0 211
ENST00000588791 MYO18A-036 nonsense_mediated_decay Homo_sapiens 0 787
ENST00000590242 MYO18A-035 processed_transcript Homo_sapiens 0 643

Loading