C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phospholipase A2, group VI
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174021 Pla2g6-005 ENSMUSG00000042632 10090 - 15:79286228-79327964 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000174021
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000174021 4.362±1.62 4.767±1.06 1.809±0.17 4.052±2.00 5.666±0.99 1.208±0.29 0.479±0.00 2.408±0.56 2.100±0.48 2.176±0.46 0.994±0.22 3.702±1.42 4.038±2.26 47.289±24.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_0007CL CIL_0007CL_0002 CGP 15:79258195-79328390
CIL_0003QB CIL_0003QB_0002 CGP 15:79286228-79359072

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001934 IEA positive regulation of protein phosphorylation
GO:0005516 IEA calmodulin binding
GO:0005739 IEA mitochondrion
GO:0005829 IEA cytosol
GO:0006935 IEA chemotaxis
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0007613 IEA memory
GO:0014832 IEA urinary bladder smooth muscle contraction
GO:0016020 IEA membrane
GO:0016042 IEA lipid catabolic process
GO:0032049 IEA cardiolipin biosynthetic process
GO:0034976 IEA response to endoplasmic reticulum stress
GO:0035774 IEA positive regulation of insulin secretion involved in cellular response to glucose stimulus
GO:0043008 IEA ATP-dependent protein binding
GO:0045909 IEA positive regulation of vasodilation
GO:0045921 IEA positive regulation of exocytosis
GO:0047499 IEA calcium-independent phospholipase A2 activity
GO:0051967 IEA negative regulation of synaptic transmission, glutamatergic
GO:0060135 IEA maternal process involved in female pregnancy
GO:0090037 IEA positive regulation of protein kinase C signaling
GO:0090200 IEA positive regulation of release of cytochrome c from mitochondria
GO:0090238 IEA positive regulation of arachidonic acid secretion
GO:1901339 IEA regulation of store-operated calcium channel activity
GO:2000304 IEA positive regulation of ceramide biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000332509 PLA2G6-001 protein_coding Homo_sapiens 0 2750
ENST00000335539 PLA2G6-201 protein_coding Homo_sapiens 0 1360
ENST00000402064 PLA2G6-002 protein_coding Homo_sapiens 0 1360
ENST00000448094 PLA2G6-023 nonsense_mediated_decay Homo_sapiens 0 531
ENST00000454670 PLA2G6-026 nonsense_mediated_decay Homo_sapiens 0 507
ENST00000463287 PLA2G6-025 retained_intron Homo_sapiens 0 318
ENST00000491986 PLA2G6-022 retained_intron Homo_sapiens 0 403
ENST00000496409 PLA2G6-024 retained_intron Homo_sapiens 0 318

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