C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired related homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174397 Prrx1-004 ENSMUSG00000026586 10090 - 1:163252866-163313668 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000174397
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000174397 2.113±0.82 0.464±0.15 0.527±0.02 2.210±0.39 0.036±0.01 0.629±0.00 0.195±0.06 0.018±0.01 1.020±0.03 1.328±0.26 0.123±0.14 0.058±0.01

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002053 IGI positive regulation of mesenchymal cell proliferation
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0030326 IGI embryonic limb morphogenesis
GO:0042472 IGI inner ear morphogenesis
GO:0042474 IMP middle ear morphogenesis
GO:0043565 IEA sequence-specific DNA binding
GO:0045880 IGI positive regulation of smoothened signaling pathway
GO:0048701 IMP embryonic cranial skeleton morphogenesis
GO:0048704 IGI embryonic skeletal system morphogenesis
GO:0048844 IGI artery morphogenesis
GO:0051216 IMP cartilage development
GO:0060021 IMP palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000239461 PRRX1-002 protein_coding Homo_sapiens 0 1090
ENST00000367760 PRRX1-001 protein_coding Homo_sapiens 0 1807
ENST00000476867 PRRX1-003 processed_transcript Homo_sapiens 0 292
ENST00000485529 PRRX1-007 processed_transcript Homo_sapiens 0 241
ENST00000495280 PRRX1-004 processed_transcript Homo_sapiens 0 292
ENST00000497230 PRRX1-005 protein_coding Homo_sapiens 0 1356
ENST00000553786 PRRX1-008 processed_transcript Homo_sapiens 0 425

Loading