C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA methyltransferase 3A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000174483 Dnmt3a-004 ENSMUSG00000020661 10090 + 12:3849635-3907887 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000792 IDA heterochromatin
GO:0001741 IDA XY body
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003886 IDA DNA (cytosine-5-)-methyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005720 IDA nuclear heterochromatin
GO:0005737 IDA cytoplasm
GO:0006306 IDA DNA methylation
GO:0006346 IDA methylation-dependent chromatin silencing
GO:0006349 IMP regulation of gene expression by genetic imprinting
GO:0007283 IMP spermatogenesis
GO:0008168 TAS methyltransferase activity
GO:0043045 IMP DNA methylation involved in embryo development
GO:0071230 IDA cellular response to amino acid stimulus
GO:0090116 IDA C-5 methylation of cytosine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000127557 dnmt3ab-202 protein_coding Danio_rerio 0 1046
ENSDART00000005239 dnmt3ab-201 protein_coding Danio_rerio 0 1046
ENSDART00000126823 dnmt3ab-001 protein_coding Danio_rerio 0 1046
ENSDART00000151921 dnmt3ab-002 protein_coding Danio_rerio 0 1046
ENST00000264709 DNMT3A-001 protein_coding Homo_sapiens 0 3035
ENST00000321117 DNMT3A-011 protein_coding Homo_sapiens 0 3035
ENST00000380746 DNMT3A-002 protein_coding Homo_sapiens 0 3035
ENST00000380756 DNMT3A-010 nonsense_mediated_decay Homo_sapiens 0 2290
ENST00000402667 DNMT3A-013 protein_coding Homo_sapiens 0 2972
ENST00000455096 AC009474.1-001 processed_pseudogene Homo_sapiens 0 1018
ENST00000461228 DNMT3A-006 processed_transcript Homo_sapiens 0 688
ENST00000466601 DNMT3A-007 retained_intron Homo_sapiens 0 809
ENST00000470983 DNMT3A-003 processed_transcript Homo_sapiens 0 684
ENST00000474807 DNMT3A-004 retained_intron Homo_sapiens 0 900
ENST00000474887 DNMT3A-008 processed_transcript Homo_sapiens 0 1094
ENST00000482935 DNMT3A-015 processed_transcript Homo_sapiens 0 675
ENST00000484184 DNMT3A-005 retained_intron Homo_sapiens 0 265
ENST00000491288 DNMT3A-009 processed_transcript Homo_sapiens 0 486
ENST00000496570 DNMT3A-017 processed_transcript Homo_sapiens 0 658

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