C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DNA (cytosine-5-)-methyltransferase 3 alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380746 DNMT3A-002 ENSG00000119772 9606 - 2:25232976-25252311 protein_coding

Homo sapiens EnsemblGRCh38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartLiverLungOvaryPlacentaTestisENST00000380746
Transcript ID Bladder Breast Colon Heart Liver Lung Ovary Placenta Testis
ENST00000380746 0.944±0.00 0.814±0.00 0.265±0.00 0.137±0.00 0.685±0.00 0.889±0.00 3.188±2.56 7.992±2.15 1.154±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JL CIL_0003JL_0002 CGP 2:25227855-25673647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000791 IDA euchromatin
GO:0003677 IDA DNA binding
GO:0003886 IDA DNA (cytosine-5-)-methyltransferase activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006306 IDA DNA methylation
GO:0006349 TAS regulation of gene expression by genetic imprinting
GO:0008168 IEA methyltransferase activity
GO:0016363 IDA nuclear matrix
GO:0042802 IPI identical protein binding
GO:0046872 IEA metal ion binding
GO:0090116 IEA C-5 methylation of cytosine

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000174817 Dnmt3a-006 protein_coding Mus_musculus 0 3315
ENSMUST00000020991 Dnmt3a-001 protein_coding Mus_musculus 0 3315
ENSMUST00000174483 Dnmt3a-004 nonsense_mediated_decay Mus_musculus 0 3035
ENSMUST00000172689 Dnmt3a-005 protein_coding Mus_musculus 0 2970
ENSMUST00000111186 Dnmt3a-201 protein_coding Mus_musculus 0 2935
ENSDART00000127557 dnmt3ab-202 protein_coding Danio_rerio 0 1064
ENSDART00000005239 dnmt3ab-201 protein_coding Danio_rerio 0 1064
ENSDART00000126823 dnmt3ab-001 protein_coding Danio_rerio 0 1064
ENSDART00000151921 dnmt3ab-002 protein_coding Danio_rerio 0 1064
ENSDART00000031712 dnmt3aa-201 protein_coding Danio_rerio 0 880
ENSDART00000100320 dnmt3aa-001 protein_coding Danio_rerio 0 880
ENSMUST00000172509 Dnmt3a-008 protein_coding Mus_musculus 0 776
ENSMUST00000174774 Dnmt3a-012 protein_coding Mus_musculus 0 752
ENSMUST00000174733 Dnmt3a-015 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000174102 Dnmt3a-010 protein_coding Mus_musculus 0 462
ENSMUST00000172749 Dnmt3a-013 protein_coding Mus_musculus 0 433
ENSMUST00000172913 Dnmt3a-016 protein_coding Mus_musculus 0 344
ENSMUST00000172879 Dnmt3a-011 protein_coding Mus_musculus 9.99967e-42 176

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