C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: receptor-like tyrosine kinase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000175883 Ryk-003 ENSMUSG00000032547 10090 + 9:102834917-102907542 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000175883
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000175883 18.661±1.32 6.119±3.65 11.972±0.33 5.138±1.87 11.460±6.11 6.317±2.01 6.115±0.50 8.507±3.19 3.747±0.78 8.761±2.98 9.121±1.22 11.293±5.64 13.449±3.78 1.172±0.52

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00019J CIL_00019J_0002 CGP 9:102834917-103096002

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005109 IPI frizzled binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0006468 IEA protein phosphorylation
GO:0007409 IGI axonogenesis
GO:0007411 IDA axon guidance
GO:0016020 IDA membrane
GO:0016021 IEA integral component of membrane
GO:0016055 IGI:IDA Wnt signaling pathway
GO:0017147 IPI Wnt-protein binding
GO:0022038 IMP corpus callosum development
GO:0030182 IDA neuron differentiation
GO:0031175 IMP neuron projection development
GO:0042813 IPI Wnt-activated receptor activity
GO:0043410 ISS positive regulation of MAPK cascade
GO:0048705 IMP skeletal system morphogenesis
GO:0048843 IGI negative regulation of axon extension involved in axon guidance
GO:0050919 IGI negative chemotaxis
GO:0071679 IMP commissural neuron axon guidance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000460933 RYK-009 protein_coding Homo_sapiens 0 2459
ENST00000464879 RYK-005 retained_intron Homo_sapiens 0 302
ENST00000473208 RYK-006 retained_intron Homo_sapiens 0 1112
ENST00000480381 RYK-002 retained_intron Homo_sapiens 0 479
ENST00000486725 RYK-004 nonsense_mediated_decay Homo_sapiens 0 472
ENST00000575880 RYKP1-001 processed_pseudogene Homo_sapiens 0 1212
ENST00000620660 RYK-201 protein_coding Homo_sapiens 0 2503
ENST00000623711 RYK-001 protein_coding Homo_sapiens 0 2449

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