C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00019J_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000007231-ENSDARG00000061896 CGP 7955 6:27222693-27373486
GeneTranscriptPositionBiotype
ENSDARG00000007231 (ryk)
receptor-like tyrosine kinase 		ENSDART00000079397 (ryk-001) 27222778-27323667 protein_coding
ENSDART00000128985 (ryk-003) 27222693-27323929 protein_coding
ENSDART00000132097 (ryk-002) 27311799-27322710 retained_intron
ENSDARG00000061896 (slco2a1)
solute carrier organic anion transporter family, member 2A1 		ENSDART00000046510 (slco2a1-201) 27332268-27373486 protein_coding
ENSDART00000147789 (slco2a1-001) 27332251-27372610 protein_coding
ENSDARG00000097000 (si:ch211-66i8.3)
si:ch211-66i8.3 		ENSDART00000156279 (si:ch211-66i8.3-001) 27328915-27331511 lincRNA
ENSDART00000156754 (si:ch211-66i8.3-002) 27329038-27331527 lincRNA

Danio rerio Ensembl (Zv9)

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CIL_00019J_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000032547-ENSMUSG00000032548 CGP 10090 9:102834917-103096002
GeneTranscriptPositionBiotype
ENSMUSG00000032547 (Ryk)
receptor-like tyrosine kinase 		ENSMUST00000035142 (Ryk-001) 102834972-102907953 protein_coding
ENSMUST00000175788 (Ryk-004) 102869066-102881662 retained_intron
ENSMUST00000175883 (Ryk-003) 102834917-102907542 protein_coding
ENSMUST00000176198 (Ryk-002) 102834982-102908305 nonsense_mediated_decay
ENSMUST00000176573 (Ryk-006) 102845833-102861897 processed_transcript
ENSMUST00000177274 (Ryk-005) 102898555-102899546 retained_intron
ENSMUSG00000032548 (Slco2a1)
solute carrier organic anion transporter family, member 2a1 		ENSMUST00000035148 (Slco2a1-001) 103008002-103090451 protein_coding
ENSMUST00000185215 (Slco2a1-003) 102988712-103020775 processed_transcript
ENSMUST00000188664 (Slco2a1-002) 103008499-103096002 nonsense_mediated_decay
ENSMUST00000190892 (Slco2a1-004) 103008154-103011907 retained_intron
ENSMUSG00000084539 (Gm25842)
predicted gene, 25842 		ENSMUST00000122590 (Gm25842-201) 102991895-102992216 misc_RNA

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00019J_0001ENSDARG00000007231ENSDART00000079397ENSDART00000128985ENSDART00000132097ENSDARG00000061896ENSDART00000046510ENSDART00000147789ENSDARG00000097000ENSDART00000156279ENSDART00000156754CIL_00019J_0002ENSMUSG00000032547ENSMUST00000035142ENSMUST00000175788ENSMUST00000175883ENSMUST00000176198ENSMUST00000176573ENSMUST00000177274ENSMUSG00000032548ENSMUST00000035148ENSMUST00000185215ENSMUST00000188664ENSMUST00000190892ENSMUSG00000084539ENSMUST00000122590
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00019J_0001ENSDARG00000007231ENSDART00000079397ENSDART00000128985ENSDARG00000061896ENSDART00000046510ENSDART00000147789ENSDARG00000097000ENSDART00000156279ENSDART00000156754CIL_00019J_0002ENSMUSG00000032547ENSMUST00000035142ENSMUST00000175883ENSMUSG00000032548ENSMUST00000035148ENSMUST00000188664ENSMUST00000190892ENSMUSG00000084539ENSMUST00000122590
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000007231 ENSDART00000079397 N/A N/A N/A 2.158±1.31 N/A N/A 3.308±1.36 2.025±1.19 0.478±0.00 N/A 1.745±0.00 N/A N/A N/A
ENSDART00000128985 N/A N/A N/A 0.594±0.01 N/A N/A 2.227±0.61 3.748±1.41 0.497±0.00 N/A 1.790±0.00 N/A N/A N/A
ENSDART00000132097 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000061896 ENSDART00000046510 N/A N/A N/A 5.341±1.00 N/A N/A 3.680±1.74 21.635±0.00 5.113±0.00 N/A N/A N/A N/A N/A
ENSDART00000147789 N/A N/A N/A 1.362±0.00 N/A N/A 0.934±0.00 4.520±0.00 19.599±0.00 N/A 0.875±0.00 N/A N/A N/A
ENSDARG00000097000 ENSDART00000156279 N/A N/A N/A N/A N/A N/A 0.284±0.19 N/A N/A N/A N/A N/A N/A N/A
ENSDART00000156754 N/A N/A N/A 0.640±0.47 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000032547 ENSMUST00000035142 22.926±3.42 18.324±3.39 22.733±0.13 9.112±5.87 16.958±7.04 20.742±2.99 10.961±0.86 15.514±1.90 7.161±0.87 35.978±1.46 11.386±0.47 26.817±11.78 10.988±4.81 2.875±1.29
ENSMUST00000175788 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000175883 18.661±1.32 6.119±3.65 11.972±0.33 5.138±1.87 11.460±6.11 6.317±2.01 6.115±0.50 8.507±3.19 3.747±0.78 8.761±2.98 9.121±1.22 11.293±5.64 13.449±3.78 1.172±0.52
ENSMUST00000176198 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000176573 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000177274 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000032548 ENSMUST00000035148 2.021±0.70 1.363±0.11 2.150±0.89 0.216±0.11 11.174±0.80 10.265±2.93 1.033±0.26 4.576±0.98 4.626±3.25 65.635±5.14 0.266±0.12 13.015±3.54 22.025±21.53 1.521±1.15
ENSMUST00000185215 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188664 1.844±0.79 1.696±0.19 N/A N/A 10.500±2.35 12.175±3.11 0.609±0.12 3.469±0.92 6.291±2.40 59.747±17.50 N/A 15.702±2.62 26.785±27.97 0.454±0.40
ENSMUST00000190892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.038±0.00
ENSMUSG00000084539 ENSMUST00000122590 0.252±0.03 N/A 0.100±0.00 N/A 0.559±0.30 N/A N/A N/A 0.209±0.05 0.237±0.00 N/A 0.255±0.00 0.320±0.20 0.211±0.00

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