C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000176163 Lhx8-003 ENSMUSG00000096225 10090 - 3:154306296-154330059 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonHeartKidneyLiverLungMusclePlacentaENSMUST00000176163
Transcript ID Adrenal Brain Colon Heart Kidney Liver Lung Muscle Placenta
ENSMUST00000176163 0.065±0.00 0.178±0.00 0.081±0.00 0.045±0.01 0.021±0.00 0.032±0.00 0.186±0.00 0.029±0.00 0.130±0.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047K CIL_00047K_0002 CGP 3:153973436-154330561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001674 IDA female germ cell nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007611 IMP learning or memory
GO:0008270 IEA zinc ion binding
GO:0008585 IMP female gonad development
GO:0021879 IMP forebrain neuron differentiation
GO:0021884 IGI forebrain neuron development
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294638 LHX8-001 protein_coding Homo_sapiens 0 1905
ENST00000356261 LHX8-002 protein_coding Homo_sapiens 0 1921
ENST00000607240 LHX8-004 retained_intron Homo_sapiens 0 758

Loading