C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: FERM domain containing 4A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000358621 FRMD4A-201 ENSG00000151474 9606 - 10:13643706-13858912 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000358621
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000358621 9.139±0.00 7.219±0.00 3.105±0.00 8.229±5.99 3.333±1.54 2.865±1.56 1.774±0.05 1.421±0.00 1.071±0.00 3.248±0.86 2.368±0.27 4.093±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000968 CIL_000968_0001 VISTA 10:13045564-13647145
CIL_000965 CIL_000965_0001 VISTA 10:13372414-13973663
CIL_000966 CIL_000966_0001 VISTA 10:13410200-14012149
CIL_00061W CIL_00061W_0002 CGP 10:13610047-14462142
CIL_000964 CIL_000964_0001 VISTA 10:13639094-14239892

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005856 IEA cytoskeleton

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075767 Frmd4a-001 protein_coding Mus_musculus 0 4464
ENSMUST00000177457 Frmd4a-013 protein_coding Mus_musculus 0 4464
ENSMUST00000091497 Frmd4a-007 protein_coding Mus_musculus 0 3879
ENSMUST00000176828 Frmd4a-015 protein_coding Mus_musculus 0 2952
ENSMUST00000175944 Frmd4a-014 protein_coding Mus_musculus 0 1895
ENSMUST00000175669 Frmd4a-009 protein_coding Mus_musculus 0 1393
ENSDART00000147284 FRMD4A-001 protein_coding Danio_rerio 0 1221
ENSDART00000093131 FRMD4A-201 protein_coding Danio_rerio 0 1214
ENSMUST00000153160 Frmd4a-006 retained_intron Mus_musculus 0 1197
ENSMUST00000115039 Frmd4a-002 retained_intron Mus_musculus 0 931
ENSMUST00000147156 Frmd4a-004 retained_intron Mus_musculus 0 931
ENSMUST00000142452 Frmd4a-005 retained_intron Mus_musculus 0 660
ENSMUST00000115037 Frmd4a-016 protein_coding Mus_musculus 0 547
ENSMUST00000176864 Frmd4a-019 nonsense_mediated_decay Mus_musculus 0 532
ENSMUST00000176803 Frmd4a-018 nonsense_mediated_decay Mus_musculus 0 459

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