C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 141
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177236 Rnf141-001 ENSMUSG00000030788 10090 - 7:110813531-110844457 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000177236
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000177236 13.882±1.56 9.636±3.51 10.451±0.64 5.379±1.37 9.060±0.97 9.266±0.72 5.593±0.52 5.980±0.51 9.460±3.05 18.844±3.51 5.188±0.38 6.604±2.84 6.174±4.83 5.208±2.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004JA CIL_0004JA_0002 CGP 7:110627661-110812405
CIL_0004J9 CIL_0004J9_0002 CGP 7:110800432-110862953

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IDA DNA binding
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005575 ND cellular_component
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0051865 IEA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000265981 RNF141-001 protein_coding Homo_sapiens 0 1118
ENST00000528665 RNF141-002 protein_coding Homo_sapiens 0 806
ENST00000530156 RNF141-004 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000533412 RNF141-005 protein_coding Homo_sapiens 0 784
ENST00000534281 RNF141-003 retained_intron Homo_sapiens 0 316

Loading