C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 141
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000265981 RNF141-001 ENSG00000110315 9606 - 11:10511678-10541217 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000265981
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000265981 4.384±0.00 6.250±0.00 0.972±0.00 18.768±6.93 8.520±6.00 2.811±0.39 1.645±0.06 4.875±2.91 3.496±1.00 5.348±1.06 4.129±0.77 3.833±0.67 2.737±0.55 10.737±1.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004J9 CIL_0004J9_0001 CGP 11:10511678-10611689

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0004842 IDA ubiquitin-protein transferase activity
GO:0005515 IEA protein binding
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding
GO:0051865 IDA protein autoubiquitination

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177236 Rnf141-001 protein_coding Mus_musculus 0 1118
ENSMUST00000106682 Rnf141-007 protein_coding Mus_musculus 0 1042
ENSMUST00000086233 Gm10179-201 pseudogene Mus_musculus 0 972
ENSMUST00000175981 Rnf141-003 protein_coding Mus_musculus 0 857
ENSMUST00000177462 Rnf141-012 protein_coding Mus_musculus 0 795
ENSMUST00000176048 Rnf141-008 retained_intron Mus_musculus 0 425
ENSMUST00000176716 Rnf141-004 processed_transcript Mus_musculus 0 418
ENSMUST00000177520 Rnf141-006 protein_coding Mus_musculus 0 357
ENSMUST00000175648 Rnf141-009 protein_coding Mus_musculus 0 339
ENSMUST00000176746 Rnf141-005 protein_coding Mus_musculus 0 289

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