C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM homeobox protein 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000177846 Lhx8-001 ENSMUSG00000096225 10090 - 3:154306294-154330561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000177846
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000177846 0.034±0.00 0.120±0.02 2.010±1.78 0.913±0.11 0.043±0.00 0.119±0.06 0.020±0.01 0.043±0.03 0.099±0.00 0.618±0.20 0.013±0.00 0.277±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00047K CIL_00047K_0002 CGP 3:153973436-154330561

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001674 IDA female germ cell nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007611 IMP learning or memory
GO:0008270 IEA zinc ion binding
GO:0008585 IMP female gonad development
GO:0021879 IMP forebrain neuron differentiation
GO:0021884 IGI forebrain neuron development
GO:0042475 IMP odontogenesis of dentin-containing tooth
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294638 LHX8-001 protein_coding Homo_sapiens 0 1905
ENST00000356261 LHX8-002 protein_coding Homo_sapiens 0 1905
ENST00000607240 LHX8-004 retained_intron Homo_sapiens 0 761

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