C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific methyltransferase 2D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000178486 Kmt2d-201 ENSMUSG00000048154 10090 - 15:98831669-98871183 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartLiverMuscleOvaryPlacentaTestisENSMUST00000178486
Transcript ID Adipose Bladder Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENSMUST00000178486 0.950±0.14 1.184±0.00 2.808±1.51 3.032±1.47 1.138±0.00 0.735±0.00 1.052±0.59 3.071±0.95 1.625±0.67 0.459±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00000J CIL_00000J_0002 CGP 15:98812798-98871204
CIL_00003S CIL_00003S_0002 CGP 15:98831669-98881404

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001555 IMP oocyte growth
GO:0001701 IMP in utero embryonic development
GO:0005634 IEA nucleus
GO:0006342 IMP chromatin silencing
GO:0006351 IEA transcription, DNA-templated
GO:0008270 IEA zinc ion binding
GO:0018024 IEA histone-lysine N-methyltransferase activity
GO:0048477 IMP oogenesis
GO:0051568 IMP histone H3-K4 methylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000053863 kmt2d-201 protein_coding Danio_rerio 0 732
ENSDART00000141458 kmt2d-001 protein_coding Danio_rerio 0 549
ENSDART00000137010 kmt2ca-001 protein_coding Danio_rerio 0 243
ENST00000301067 KMT2D-001 protein_coding Homo_sapiens 0 7993
ENST00000526209 KMT2D-002 protein_coding Homo_sapiens 0 1053
ENST00000547610 KMT2D-007 protein_coding Homo_sapiens 0 743
ENST00000548065 PRKAG1-001 protein_coding Homo_sapiens 0 374
ENST00000549799 KMT2D-006 processed_transcript Homo_sapiens 0 411
ENST00000552391 KMT2D-004 retained_intron Homo_sapiens 0 228

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