C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinaldehyde binding protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179243 Rlbp1-202 ENSMUSG00000039194 10090 - 7:79374871-79387027 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverOvaryPlacentaTestisENSMUST00000179243
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000179243 0.014±0.00 0.072±0.04 0.029±0.00 5.331±3.26 0.050±0.03 0.029±0.00 0.028±0.00 0.036±0.03 0.033±0.02 0.019±0.00 0.221±0.15 0.476±0.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RB CIL_0002RB_0003 CGP 7:79273201-79387027
CIL_00011C CIL_00011C_0002 CGP 7:79374871-79450265

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005215 IEA transporter activity
GO:0005502 IDA 11-cis retinal binding
GO:0005737 IEA cytoplasm
GO:0006810 IEA transport
GO:0007601 IEA visual perception
GO:0019841 IEA retinol binding
GO:0050896 IEA response to stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268125 RLBP1-001 protein_coding Homo_sapiens 0 1075
ENST00000567787 RLBP1-002 nonsense_mediated_decay Homo_sapiens 0 411

Loading