C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: elongation factor Tu GTP binding domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179489 Eftud1-201 ENSMUSG00000038563 10090 + 7:82648614-82777852 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000179489
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000179489 1.269±0.55 0.691±0.09 1.110±0.37 1.229±0.53 1.058±0.48 0.991±0.78 0.545±0.23 0.923±0.27 0.672±0.21 0.796±0.24 1.378±0.55 1.928±0.94 1.191±0.54 10.620±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U9 CIL_0007U9_0002 VISTA 7:82082717-82683985

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 IEA translation elongation factor activity
GO:0003924 ISS GTPase activity
GO:0005525 IEA GTP binding
GO:0005575 ND cellular_component
GO:0006184 ISS GTP catabolic process
GO:0006414 IEA translational elongation
GO:0042256 ISS mature ribosome assembly
GO:0043022 ISS ribosome binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000268206 EFTUD1-002 protein_coding Homo_sapiens 0 3869
ENST00000359445 EFTUD1-001 protein_coding Homo_sapiens 0 3567
ENST00000557939 EFTUD1-006 protein_coding Homo_sapiens 0 278
ENST00000558187 EFTUD1P1-001 processed_transcript Homo_sapiens 0 496
ENST00000558550 EFTUD1P1-003 processed_transcript Homo_sapiens 0 272
ENST00000560381 EFTUD1P1-004 processed_transcript Homo_sapiens 0 407
ENST00000560401 EFTUD1P1-002 transcribed_unprocessed_pseudogene Homo_sapiens 0 931
ENST00000561331 EFTUD1-007 processed_transcript Homo_sapiens 0 604
ENST00000561340 EFTUD1-010 processed_transcript Homo_sapiens 0 492
ENST00000561389 EFTUD1-003 nonsense_mediated_decay Homo_sapiens 0 501

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