C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0007U9_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1514 VISTA 9606 15:83407808-84009696
GeneTranscriptPositionBiotype
ENSG00000140600 (SH3GL3)
SH3-domain GRB2-like 3 		ENST00000324537 (SH3GL3-001) 83447531-83618739 protein_coding
ENST00000427482 (SH3GL3-002) 83447228-83618743 protein_coding
ENST00000467735 (SH3GL3-004) 83609403-83618305 processed_transcript
ENST00000492099 (SH3GL3-003) 83447228-83565883 retained_intron
ENST00000563901 (SH3GL3-005) 83447376-83618739 nonsense_mediated_decay
ENST00000564054 (SH3GL3-006) 83609270-83618642 processed_transcript
ENSG00000156218 (ADAMTSL3)
ADAMTS-like 3 		ENST00000286744 (ADAMTSL3-001) 83654086-84039842 protein_coding
ENST00000561483 (ADAMTSL3-003) 83654095-84025551 retained_intron
ENST00000562296 (ADAMTSL3-007) 83945735-83982489 processed_transcript
ENST00000565653 (ADAMTSL3-004) 83694294-83819979 processed_transcript
ENST00000567476 (ADAMTSL3-002) 83654088-84039427 protein_coding
ENST00000567663 (ADAMTSL3-005) 83870912-83891065 processed_transcript
ENST00000567716 (ADAMTSL3-006) 83945756-83982305 processed_transcript
ENST00000569510 (ADAMTSL3-008) 83654095-83862935 retained_intron
ENSG00000221484 (AC027807.1)
 ENST00000408557 (AC027807.1-201) 83989233-83989345 miRNA
ENSG00000259986 (RP11-382A20.4)
 ENST00000561498 (RP11-382A20.4-002) 83180802-83184796 antisense
ENST00000565495 (RP11-382A20.4-003) 83184805-83439445 antisense
ENST00000568634 (RP11-382A20.4-001) 83179182-83186068 antisense
ENSG00000261665 (TUBA8P2)
tubulin, alpha 8 pseudogene 2 		ENST00000569261 (TUBA8P2-001) 83739784-83740199 transcribed_processed_pseudogene
ENSG00000274128 (RP11-342A23.2)
 ENST00000616099 (RP11-342A23.2-001) 83962176-83962583 sense_intronic

Homo sapiens Ensembl (GRCh38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11
CIL_0007U9_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
hs1514 VISTA 10090 7:82082717-82683985
GeneTranscriptPositionBiotype
ENSMUSG00000030638 (Sh3gl3)
SH3-domain GRB2-like 3 		ENSMUST00000032874 (Sh3gl3-001) 82174796-82307419 protein_coding
ENSMUST00000177883 (Sh3gl3-005) 82174856-82307419 nonsense_mediated_decay
ENSMUST00000177895 (Sh3gl3-006) 82174950-82307419 nonsense_mediated_decay
ENSMUST00000178526 (Sh3gl3-008) 82270886-82307228 protein_coding
ENSMUST00000179150 (Sh3gl3-004) 82175234-82176292 processed_transcript
ENSMUST00000179318 (Sh3gl3-002) 82173840-82307087 protein_coding
ENSMUST00000179800 (Sh3gl3-009) 82174842-82270038 retained_intron
ENSMUST00000180183 (Sh3gl3-007) 82174195-82284095 protein_coding
ENSMUST00000180243 (Sh3gl3-003) 82175156-82284158 protein_coding
ENSMUSG00000038563 (Eftud1)
elongation factor Tu GTP binding domain containing 1 		ENSMUST00000039881 (Eftud1-001) 82648641-82777852 protein_coding
ENSMUST00000125245 (Eftud1-002) 82648629-82698684 retained_intron
ENSMUST00000141726 (Eftud1-003) 82648614-82674555 protein_coding
ENSMUST00000153265 (Eftud1-004) 82670229-82674544 processed_transcript
ENSMUST00000179489 (Eftud1-201) 82648614-82777852 protein_coding
ENSMUSG00000038570 (Fam154b)
family with sequence similarity 154, member B 		ENSMUST00000056728 (Fam154b-001) 82632960-82648523 protein_coding
ENSMUST00000126478 (Fam154b-003) 82646168-82648528 processed_transcript
ENSMUST00000151632 (Fam154b-002) 82642141-82648528 retained_intron
ENSMUST00000156720 (Fam154b-004) 82635288-82648523 processed_transcript
ENSMUSG00000070469 (Adamtsl3)
ADAMTS-like 3 		ENSMUST00000172490 (Adamtsl3-004) 82335694-82340024 processed_transcript
ENSMUST00000172784 (Adamtsl3-003) 82611777-82612774 protein_coding
ENSMUST00000173287 (Adamtsl3-001) 82335732-82614450 protein_coding
ENSMUST00000173828 (Adamtsl3-005) 82337218-82612430 protein_coding
ENSMUST00000174495 (Adamtsl3-002) 82408474-82465844 retained_intron

Mus musculus Ensembl (GRCm38)

Genome
Exciting message
Genes
Structures from Ensembl
Connecting
Transcripts
Structures from Ensembl
Connecting
Powered by Dalliance 0.11.11

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007U9_0001ENSG00000140600ENST00000324537ENST00000427482ENST00000467735ENST00000492099ENST00000563901ENST00000564054ENSG00000156218ENST00000286744ENST00000561483ENST00000562296ENST00000565653ENST00000567476ENST00000567663ENST00000567716ENST00000569510ENSG00000221484ENST00000408557ENSG00000259986ENST00000561498ENST00000565495ENST00000568634ENSG00000261665ENST00000569261ENSG00000274128ENST00000616099CIL_0007U9_0002ENSMUSG00000030638ENSMUST00000032874ENSMUST00000177883ENSMUST00000177895ENSMUST00000178526ENSMUST00000179150ENSMUST00000179318ENSMUST00000179800ENSMUST00000180183ENSMUST00000180243ENSMUSG00000038563ENSMUST00000039881ENSMUST00000125245ENSMUST00000141726ENSMUST00000153265ENSMUST00000179489ENSMUSG00000038570ENSMUST00000056728ENSMUST00000126478ENSMUST00000151632ENSMUST00000156720ENSMUSG00000070469ENSMUST00000172490ENSMUST00000172784ENSMUST00000173287ENSMUST00000173828ENSMUST00000174495
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0007U9_0001ENSG00000140600ENST00000324537ENST00000427482ENST00000467735ENST00000492099ENST00000563901ENST00000564054ENSG00000156218ENST00000286744ENST00000561483ENST00000562296ENST00000567476ENST00000569510ENSG00000221484ENST00000408557ENSG00000259986ENST00000561498ENST00000565495ENST00000568634ENSG00000261665ENST00000569261ENSG00000274128ENST00000616099CIL_0007U9_0002ENSMUSG00000030638ENSMUST00000032874ENSMUST00000177883ENSMUST00000177895ENSMUST00000178526ENSMUST00000179318ENSMUST00000179800ENSMUST00000180183ENSMUST00000180243ENSMUSG00000038563ENSMUST00000039881ENSMUST00000125245ENSMUST00000141726ENSMUST00000153265ENSMUST00000179489ENSMUSG00000038570ENSMUST00000056728ENSMUST00000126478ENSMUST00000151632ENSMUST00000156720ENSMUSG00000070469ENSMUST00000172490ENSMUST00000172784ENSMUST00000173287ENSMUST00000173828ENSMUST00000174495
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000140600 ENST00000324537 0.011±0.00 0.057±0.00 N/A N/A 0.005±0.00 0.045±0.00 0.016±0.00 0.200±0.00 0.161±0.13 0.132±0.00 0.047±0.00 0.088±0.04 N/A N/A
ENST00000427482 N/A N/A N/A 13.166±0.17 N/A 0.134±0.00 N/A N/A 0.780±0.00 N/A N/A 0.513±0.16 0.115±0.00 5.366±0.00
ENST00000467735 N/A N/A N/A N/A N/A N/A N/A 0.716±0.00 N/A N/A 0.305±0.00 N/A N/A N/A
ENST00000492099 N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000563901 N/A N/A N/A 17.450±6.74 N/A N/A N/A 0.447±0.00 N/A 0.532±0.39 N/A 0.099±0.06 0.918±0.74 7.578±0.00
ENST00000564054 N/A N/A 0.131±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 0.194±0.00 N/A 15.469±7.93
ENSG00000156218 ENST00000286744 0.211±0.00 0.723±0.00 N/A 0.120±0.04 0.681±0.00 1.218±0.00 0.422±0.00 0.485±0.00 0.862±0.00 2.117±0.75 N/A 0.647±0.38 1.128±0.72 1.801±0.00
ENST00000561483 N/A N/A 0.718±0.00 0.465±0.00 1.372±0.00 0.416±0.00 1.395±0.00 3.058±0.00 3.025±0.00 N/A N/A 0.501±0.00 N/A N/A
ENST00000562296 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.746±0.00 N/A N/A
ENST00000565653 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567476 0.861±0.00 N/A N/A 0.212±0.10 0.549±0.17 3.093±0.00 2.442±0.00 0.960±0.00 1.295±0.00 4.166±0.00 0.201±0.00 0.130±0.00 1.125±0.27 1.268±0.12
ENST00000567663 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567716 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000569510 0.657±0.00 2.026±0.00 N/A 1.781±0.00 1.314±0.15 0.747±0.00 1.837±0.00 0.844±0.00 N/A N/A 0.186±0.00 0.855±0.42 1.146±0.00 2.429±1.22
ENSG00000221484 ENST00000408557 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.459±0.00 N/A N/A
ENSG00000259986 ENST00000561498 0.403±0.00 0.754±0.00 0.660±0.00 0.231±0.00 0.369±0.00 0.500±0.00 0.276±0.13 0.317±0.00 N/A 0.546±0.00 0.266±0.00 0.470±0.38 N/A 0.169±0.02
ENST00000565495 0.533±0.00 2.488±0.00 N/A 0.690±0.00 1.150±0.00 0.311±0.00 0.787±0.00 0.993±0.00 0.311±0.00 0.100±0.00 0.506±0.00 4.688±0.00 N/A 0.218±0.00
ENST00000568634 0.101±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.064±0.00
ENSG00000261665 ENST00000569261 N/A N/A N/A N/A 0.044±0.00 N/A N/A N/A 0.770±0.00 N/A N/A N/A 0.096±0.00 0.104±0.00
ENSG00000274128 ENST00000616099 0.169±0.00 0.280±0.00 N/A 0.044±0.00 0.116±0.00 0.509±0.00 0.249±0.00 N/A 0.125±0.00 N/A N/A 0.060±0.00 0.106±0.00 0.230±0.11
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030638 ENSMUST00000032874 0.962±0.02 0.336±0.14 7.606±0.31 6.178±1.18 0.264±0.05 1.290±0.00 0.131±0.00 0.153±0.00 0.026±0.01 0.241±0.09 0.047±0.00 0.479±0.35 0.354±0.12 23.784±2.66
ENSMUST00000177883 N/A 0.817±0.36 N/A N/A 0.270±0.16 0.870±0.00 0.314±0.17 0.079±0.02 0.030±0.00 N/A 0.036±0.00 0.468±0.34 0.569±0.00 N/A
ENSMUST00000177895 0.202±0.02 N/A 6.658±0.39 11.267±8.33 0.259±0.10 0.460±0.00 0.288±0.00 0.257±0.06 0.050±0.01 0.219±0.00 0.114±0.05 0.786±0.21 0.400±0.16 23.924±15.26
ENSMUST00000178526 N/A N/A N/A N/A 0.511±0.00 N/A N/A 0.114±0.02 N/A 0.296±0.02 0.025±0.00 0.301±0.00 N/A N/A
ENSMUST00000179150 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000179318 N/A 0.197±0.10 N/A N/A 0.131±0.01 N/A N/A N/A N/A N/A N/A 0.530±0.04 0.209±0.00 23.087±23.42
ENSMUST00000179800 0.489±0.07 0.116±0.07 N/A N/A 0.071±0.03 0.113±0.08 0.047±0.01 N/A 0.018±0.00 0.057±0.03 0.022±0.00 0.241±0.17 0.097±0.00 5.639±0.99
ENSMUST00000180183 0.129±0.00 N/A N/A N/A N/A N/A 0.143±0.00 0.066±0.00 0.104±0.00 0.159±0.00 N/A 0.720±0.00 0.190±0.00 105.108±0.00
ENSMUST00000180243 N/A N/A N/A N/A N/A N/A N/A N/A 0.021±0.00 N/A 0.076±0.00 0.544±0.50 N/A N/A
ENSMUSG00000038563 ENSMUST00000039881 1.991±0.72 0.888±0.04 2.117±0.36 2.096±0.45 1.186±0.20 1.840±0.30 0.644±0.13 1.757±0.39 1.587±0.63 1.819±0.86 1.408±0.69 2.703±1.84 2.696±1.30 4.526±0.34
ENSMUST00000125245 N/A 0.462±0.13 N/A N/A 0.432±0.04 N/A N/A N/A N/A N/A N/A 1.105±0.00 N/A N/A
ENSMUST00000141726 3.415±0.00 N/A N/A N/A 2.875±1.19 1.987±0.04 0.872±0.11 N/A N/A N/A N/A 4.041±1.25 N/A N/A
ENSMUST00000153265 N/A 1.358±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 11.029±0.00 N/A
ENSMUST00000179489 1.269±0.55 0.691±0.09 1.110±0.37 1.229±0.53 1.058±0.48 0.991±0.78 0.545±0.23 0.923±0.27 0.672±0.21 0.796±0.24 1.378±0.55 1.928±0.94 1.191±0.54 10.620±0.00
ENSMUSG00000038570 ENSMUST00000056728 0.069±0.05 0.102±0.03 0.126±0.00 0.271±0.18 0.167±0.04 0.057±0.01 0.074±0.05 0.215±0.06 0.052±0.03 1.861±0.30 0.064±0.02 0.840±0.48 0.061±0.03 N/A
ENSMUST00000126478 1.525±1.01 0.758±0.36 1.755±0.21 2.766±1.49 1.092±0.32 0.290±0.08 1.357±0.15 1.439±0.28 0.335±0.27 2.571±1.00 1.317±0.71 2.720±1.13 0.160±0.00 99.727±46.54
ENSMUST00000151632 0.062±0.02 N/A 0.143±0.00 0.160±0.07 0.064±0.00 N/A N/A N/A 0.041±0.02 N/A 0.027±0.00 N/A 0.038±0.02 0.167±0.00
ENSMUST00000156720 N/A N/A N/A N/A 0.522±0.00 0.280±0.10 N/A 0.567±0.00 0.134±0.00 N/A N/A 0.880±0.14 N/A N/A
ENSMUSG00000070469 ENSMUST00000172490 N/A 0.584±0.05 N/A N/A N/A N/A N/A N/A 0.079±0.00 N/A N/A 1.011±0.00 N/A N/A
ENSMUST00000172784 N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.02 N/A N/A N/A 0.114±0.05 N/A
ENSMUST00000173287 1.099±0.64 0.245±0.05 4.977±0.28 0.135±0.02 0.563±0.17 0.845±0.29 0.925±0.36 0.144±0.08 0.013±0.01 1.870±0.20 0.168±0.09 0.627±0.14 0.023±0.01 0.176±0.01
ENSMUST00000173828 N/A 0.263±0.11 N/A N/A N/A N/A N/A N/A 0.029±0.02 N/A N/A 0.215±0.00 0.051±0.00 0.183±0.00
ENSMUST00000174495 N/A N/A N/A 0.347±0.00 N/A N/A N/A N/A N/A N/A N/A 0.604±0.00 0.061±0.02 N/A

Loading