C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribonuclease T2B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000179728 Rnaset2b-202 ENSMUSG00000094724 10090 + 17:6978907-7011299 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000179728
Transcript ID Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000179728 0.398±0.26 0.599±0.04 0.371±0.00 5.005±0.74 0.344±0.06 1.292±0.16 0.493±0.17 0.171±0.05 0.370±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00094V CIL_00094V_0002 VISTA 17:6968493-7569968

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0004540 ISS ribonuclease activity
GO:0005615 ISS extracellular space
GO:0005764 ISS lysosome
GO:0005788 ISS endoplasmic reticulum lumen
GO:0006401 ISS RNA catabolic process
GO:0033897 IEA ribonuclease T2 activity
GO:0090501 ISS RNA phosphodiester bond hydrolysis
GO:0090502 IEA RNA phosphodiester bond hydrolysis, endonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000028008 RNASET2-012 nonsense_mediated_decay Homo_sapiens 0 436
ENST00000366855 RNASET2-007 protein_coding Homo_sapiens 0 455
ENST00000421787 RNASET2-002 nonsense_mediated_decay Homo_sapiens 4e-24 117
ENST00000476238 RNASET2-006 protein_coding Homo_sapiens 0 455
ENST00000478180 RNASET2-004 protein_coding Homo_sapiens 0 429
ENST00000496851 RNASET2-005 processed_transcript Homo_sapiens 0 276
ENST00000499370 RNASET2-010 retained_intron Homo_sapiens 0 294
ENST00000507747 RP11-514O12.4-001 protein_coding Homo_sapiens 0 292
ENST00000508775 RNASET2-001 protein_coding Homo_sapiens 0 455
ENST00000611959 RNASET2-201 protein_coding Homo_sapiens 3e-24 117
ENST00000620173 RNASET2-202 protein_coding Homo_sapiens 9e-25 119

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