C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H1 histone family, member 0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180086 H1f0-201 ENSMUSG00000096210 10090 + 15:79028212-79030498 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000180086
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000180086 46.266±13.30 82.681±15.21 46.720±3.53 68.556±42.80 44.704±16.39 136.204±17.86 25.901±2.52 70.903±8.41 53.175±15.44 56.944±7.21 49.090±1.99 79.929±26.78 55.851±18.52 5.011±2.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0002 VISTA 15:78863840-79464236
CIL_0008KJ CIL_0008KJ_0002 VISTA 15:78865517-79466323
CIL_0008BX CIL_0008BX_0002 VISTA 15:78873761-79474273
CIL_0008KA CIL_0008KA_0002 VISTA 15:78875821-79476550
CIL_00082J CIL_00082J_0002 VISTA 15:78908803-79509777
CIL_0008C1 CIL_0008C1_0002 VISTA 15:78918952-79520098
CIL_00082K CIL_00082K_0002 VISTA 15:78923635-79524085
CIL_0001D1 CIL_0001D1_0002 CGP 15:78947724-79030498
CIL_0008MM CIL_0008MM_0002 VISTA 15:79023554-79624112
CIL_000409 CIL_000409_0002 CGP 15:79028212-79043558

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0000790 IEA nuclear chromatin
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005719 IEA nuclear euchromatin
GO:0005794 IEA Golgi apparatus
GO:0006334 IEA nucleosome assembly
GO:0015629 IEA actin cytoskeleton
GO:0031490 IEA chromatin DNA binding
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000340857 H1F0-001 protein_coding Homo_sapiens 0 1149

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