C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H1 histone family, member 0
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000340857 H1F0-001 ENSG00000189060 9606 + 22:37805093-37807436 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000340857
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000340857 52.661±0.00 108.612±0.00 5.669±0.00 31.136±24.95 29.797±21.24 33.910±26.99 26.621±23.91 48.322±29.25 43.652±40.00 20.410±18.05 22.084±12.27 84.906±63.91 49.651±10.69 41.802±11.97

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099H CIL_00099H_0001 VISTA 22:37683926-38284300
CIL_0008KJ CIL_0008KJ_0001 VISTA 22:37685616-38286450
CIL_0008BX CIL_0008BX_0001 VISTA 22:37696030-38296592
CIL_0001D1 CIL_0001D1_0001 CGP 22:37697004-37807436
CIL_0008KA CIL_0008KA_0001 VISTA 22:37698338-38299192
CIL_00082J CIL_00082J_0001 VISTA 22:37733233-38334508
CIL_0008C1 CIL_0008C1_0001 VISTA 22:37746133-38346872
CIL_00082K CIL_00082K_0001 VISTA 22:37750385-38350990
CIL_000409 CIL_000409_0001 CGP 22:37805093-37817176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0000790 IDA nuclear chromatin
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005719 IDA nuclear euchromatin
GO:0005794 IDA Golgi apparatus
GO:0006309 TAS apoptotic DNA fragmentation
GO:0006334 IEA nucleosome assembly
GO:0006915 TAS apoptotic process
GO:0006921 TAS cellular component disassembly involved in execution phase of apoptosis
GO:0015629 IDA actin cytoskeleton
GO:0031490 IDA chromatin DNA binding
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180086 H1f0-201 protein_coding Mus_musculus 0 1149

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