C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: family with sequence similarity 193, member A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000180376 Fam193a-001 ENSMUSG00000037210 10090 + 5:34369933-34486456 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000180376
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000180376 8.321±3.07 4.579±2.95 6.550±0.47 16.732±6.09 6.368±2.72 5.582±2.94 2.847±1.00 5.120±2.74 3.765±1.19 8.209±0.75 2.050±0.14 10.448±3.97 10.726±2.97 27.437±6.47

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00057G CIL_00057G_0002 CGP 5:34336289-34486456
CIL_0003OC CIL_0003OC_0003 CGP 5:34369933-34513997

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000075216 fam193a-201 protein_coding Danio_rerio 1e-33 150
ENST00000324666 FAM193A-001 protein_coding Homo_sapiens 0 3890
ENST00000382839 FAM193A-002 protein_coding Homo_sapiens 0 4861
ENST00000502458 FAM193A-005 protein_coding Homo_sapiens 0 3326
ENST00000505311 FAM193A-007 protein_coding Homo_sapiens 0 3988
ENST00000506120 FAM193A-010 retained_intron Homo_sapiens 0 536
ENST00000506904 FAM193A-009 retained_intron Homo_sapiens 0 394
ENST00000508235 RNF4-022 nonsense_mediated_decay Homo_sapiens 0 414
ENST00000509050 FAM193A-008 protein_coding Homo_sapiens 0 407
ENST00000512465 FAM193A-003 nonsense_mediated_decay Homo_sapiens 0 2863
ENST00000513350 FAM193A-004 protein_coding Homo_sapiens 0 3055
ENST00000513898 FAM193A-006 nonsense_mediated_decay Homo_sapiens 0 3825
ENST00000545951 FAM193A-201 protein_coding Homo_sapiens 0 3988

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