C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: ring finger protein 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000508235 RNF4-022 ENSG00000063978 9606 + 4:2512477-2625320 nonsense_mediated_decay

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OB CIL_0003OB_0002 CGP 4:2269582-2462963
CIL_00057G CIL_00057G_0001 CGP 4:2462220-2732565

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0008270 IEA zinc ion binding
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000180376 Fam193a-001 protein_coding Mus_musculus 0 414
ENSMUST00000182047 Rnf4-006 protein_coding Mus_musculus 0 370
ENSMUST00000030992 Rnf4-001 protein_coding Mus_musculus 0 370
ENSMUST00000182709 Rnf4-002 protein_coding Mus_musculus 0 370
ENSMUST00000119524 Gm16074-001 processed_pseudogene Mus_musculus 0 200
ENSMUST00000183265 Rnf4-003 retained_intron Mus_musculus 4.2039e-45 185
ENSMUST00000182970 Rnf4-004 retained_intron Mus_musculus 6e-28 128
ENSMUST00000181991 Rnf4-011 processed_transcript Mus_musculus 6e-23 111
ENSMUST00000182583 Rnf4-005 protein_coding Mus_musculus 3e-21 106

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