C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_00057G_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000063978-ENSG00000125386 CGP 9606 4:2462220-2732565
GeneTranscriptPositionBiotype
ENSG00000063978 (RNF4)
ring finger protein 4 		ENST00000314289 (RNF4-001) 2468937-2515855 protein_coding
ENST00000502316 (RNF4-008) 2469097-2513811 protein_coding
ENST00000503123 (RNF4-017) 2469181-2497103 processed_transcript
ENST00000503659 (RNF4-010) 2462220-2497012 protein_coding
ENST00000504224 (RNF4-006) 2468729-2500738 protein_coding
ENST00000504782 (RNF4-012) 2469107-2490798 retained_intron
ENST00000506706 (RNF4-003) 2469453-2514474 protein_coding
ENST00000507247 (RNF4-020) 2469105-2513711 protein_coding
ENST00000507784 (RNF4-013) 2469137-2497300 retained_intron
ENST00000508235 (RNF4-022) 2512477-2625320 nonsense_mediated_decay
ENST00000509206 (RNF4-016) 2469194-2497079 processed_transcript
ENST00000509258 (RNF4-002) 2469106-2512334 protein_coding
ENST00000509388 (RNF4-007) 2469104-2513131 processed_transcript
ENST00000511600 (RNF4-005) 2479853-2515854 protein_coding
ENST00000511843 (RNF4-011) 2469106-2512590 processed_transcript
ENST00000511859 (RNF4-004) 2469140-2514503 protein_coding
ENST00000511892 (RNF4-015) 2469140-2497079 processed_transcript
ENST00000513284 (RNF4-019) 2469107-2512511 nonsense_mediated_decay
ENST00000513450 (RNF4-021) 2489811-2500698 protein_coding
ENST00000513578 (RNF4-014) 2469139-2500748 nonsense_mediated_decay
ENST00000513643 (RNF4-018) 2469159-2512597 processed_transcript
ENST00000541204 (RNF4-201) 2469068-2515854 protein_coding
ENSG00000248155 (WI2-89927D4.1)
 ENST00000511554 (WI2-89927D4.1-001) 2607870-2608146 unprocessed_pseudogene
ENSG00000248399 (RP11-503N18.4)
 ENST00000502641 (RP11-503N18.4-001) 2463797-2464124 sense_intronic
ENSG00000251229 (RP11-503N18.5)
 ENST00000508865 (RP11-503N18.5-001) 2505081-2506279 processed_pseudogene

Homo sapiens Ensembl (GRCh38)

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CIL_00057G_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000029110-ENSMUSG00000037210 CGP 10090 5:34336289-34486456
GeneTranscriptPositionBiotype
ENSMUSG00000029110 (Rnf4)
ring finger protein 4 		ENSMUST00000030992 (Rnf4-001) 34336380-34353436 protein_coding
ENSMUST00000181991 (Rnf4-011) 34336418-34350033 processed_transcript
ENSMUST00000181999 (Rnf4-008) 34336417-34347134 retained_intron
ENSMUST00000182047 (Rnf4-006) 34336932-34353424 protein_coding
ENSMUST00000182582 (Rnf4-010) 34336419-34342628 processed_transcript
ENSMUST00000182583 (Rnf4-005) 34336685-34350030 protein_coding
ENSMUST00000182709 (Rnf4-002) 34336289-34353436 protein_coding
ENSMUST00000182772 (Rnf4-007) 34336424-34347426 retained_intron
ENSMUST00000182810 (Rnf4-009) 34337319-34342664 processed_transcript
ENSMUST00000182970 (Rnf4-004) 34336328-34350527 retained_intron
ENSMUST00000183071 (Rnf4-012) 34336446-34349868 retained_intron
ENSMUST00000183265 (Rnf4-003) 34351116-34355629 retained_intron
ENSMUSG00000037210 (Fam193a)
family with sequence similarity 193, member A 		ENSMUST00000094867 (Fam193a-201) 34426337-34485747 protein_coding
ENSMUST00000180376 (Fam193a-001) 34369933-34486456 protein_coding
ENSMUST00000181379 (Fam193a-002) 34466129-34477689 protein_coding
ENSMUSG00000098062 (Gm26931)
predicted gene, 26931 		ENSMUST00000182273 (Gm26931-001) 34481914-34482522 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00057G_0001ENSG00000063978ENST00000314289ENST00000502316ENST00000503123ENST00000503659ENST00000504224ENST00000504782ENST00000506706ENST00000507247ENST00000507784ENST00000508235ENST00000509206ENST00000509258ENST00000509388ENST00000511600ENST00000511843ENST00000511859ENST00000511892ENST00000513284ENST00000513450ENST00000513578ENST00000513643ENST00000541204ENSG00000248155ENST00000511554ENSG00000248399ENST00000502641ENSG00000251229ENST00000508865CIL_00057G_0002ENSMUSG00000029110ENSMUST00000030992ENSMUST00000181991ENSMUST00000181999ENSMUST00000182047ENSMUST00000182582ENSMUST00000182583ENSMUST00000182709ENSMUST00000182772ENSMUST00000182810ENSMUST00000182970ENSMUST00000183071ENSMUST00000183265ENSMUSG00000037210ENSMUST00000094867ENSMUST00000180376ENSMUST00000181379ENSMUSG00000098062ENSMUST00000182273
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_00057G_0001ENSG00000063978ENST00000314289ENST00000511843ENST00000511859ENST00000513284ENST00000541204ENSG00000248155ENST00000511554ENSG00000248399ENST00000502641ENSG00000251229ENST00000508865CIL_00057G_0002ENSMUSG00000029110ENSMUST00000030992ENSMUST00000181991ENSMUST00000182047ENSMUST00000182583ENSMUST00000182709ENSMUSG00000037210ENSMUST00000094867ENSMUST00000180376ENSMUST00000181379ENSMUSG00000098062ENSMUST00000182273
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000063978 ENST00000314289 20.047±0.00 9.646±0.00 N/A 3.993±0.00 7.840±0.00 12.440±0.00 8.568±0.00 7.916±6.60 4.101±0.10 2.359±0.00 2.644±1.44 13.862±6.57 12.929±2.67 17.107±0.00
ENST00000502316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.896±0.00 N/A N/A N/A
ENST00000511859 N/A N/A 4.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.681±0.00 N/A N/A
ENST00000511892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513284 N/A N/A N/A N/A N/A 9.738±0.00 3.325±0.00 N/A N/A 13.240±0.00 N/A N/A N/A N/A
ENST00000513450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541204 N/A N/A N/A N/A 4.876±0.00 2.913±0.00 N/A N/A 2.346±0.00 N/A 4.460±0.00 N/A N/A 6.421±0.00
ENSG00000248155 ENST00000511554 N/A 0.256±0.00 N/A 0.271±0.00 N/A N/A N/A N/A N/A N/A N/A 0.514±0.00 N/A 0.155±0.00
ENSG00000248399 ENST00000502641 N/A N/A N/A N/A N/A N/A N/A N/A 0.090±0.00 1.952±0.00 N/A N/A N/A 4.002±2.58
ENSG00000251229 ENST00000508865 0.605±0.00 1.458±0.00 0.212±0.00 0.577±0.00 0.327±0.24 0.094±0.01 0.285±0.11 0.413±0.00 0.126±0.00 0.579±0.00 0.167±0.15 0.234±0.10 N/A 0.239±0.18
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000029110 ENSMUST00000030992 38.531±3.90 6.026±0.00 21.933±4.36 23.141±13.55 37.975±16.69 10.688±3.01 7.178±2.67 11.528±3.57 16.084±9.24 16.056±2.41 2.023±1.14 30.973±11.75 33.079±16.78 N/A
ENSMUST00000181991 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 75.131±0.00 N/A 348.153±0.00
ENSMUST00000181999 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182047 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 26.508±17.76
ENSMUST00000182582 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182583 N/A N/A N/A 77.199±0.00 N/A N/A N/A N/A N/A N/A N/A 115.839±0.00 388.866±91.55 272.294±0.00
ENSMUST00000182709 17.110±3.98 28.220±3.65 21.385±3.89 11.307±5.78 12.994±5.69 23.076±8.11 5.429±2.93 13.695±3.51 22.272±4.29 17.410±2.48 3.237±1.34 32.928±12.80 27.820±10.92 13.014±4.70
ENSMUST00000182772 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182810 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182970 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183071 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000183265 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000037210 ENSMUST00000094867 N/A 5.449±0.57 N/A N/A 5.103±0.00 4.268±0.71 1.156±0.22 4.028±1.19 1.838±0.33 N/A 0.560±0.00 5.398±1.89 3.076±0.29 N/A
ENSMUST00000180376 8.321±3.07 4.579±2.95 6.550±0.47 16.732±6.09 6.368±2.72 5.582±2.94 2.847±1.00 5.120±2.74 3.765±1.19 8.209±0.75 2.050±0.14 10.448±3.97 10.726±2.97 27.437±6.47
ENSMUST00000181379 N/A N/A N/A N/A 1.668±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098062 ENSMUST00000182273 1.717±0.91 1.123±0.78 1.479±0.00 2.314±0.31 1.172±0.22 0.941±0.31 0.191±0.06 0.252±0.10 0.547±0.24 0.683±0.21 0.231±0.13 1.679±0.69 0.708±0.25 0.929±0.50

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