C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003OC_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000036595-ENSDARG00000074501 CGP 7955 1:37162968-37227925
GeneTranscriptPositionBiotype
ENSDARG00000036595 (fam193a)
family with sequence similarity 193, member A 		ENSDART00000075216 (fam193a-201) 37162968-37212687 protein_coding
ENSDARG00000074501 (TNIP2)
TNFAIP3 interacting protein 2 		ENSDART00000113542 (TNIP2-201) 37223711-37227925 protein_coding

Danio rerio Ensembl (Zv9)

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CIL_0003OC_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000125386-ENSG00000168884 CGP 9606 4:2625261-2756376
GeneTranscriptPositionBiotype
ENSG00000063978 (RNF4)
ring finger protein 4 		ENST00000314289 (RNF4-001) 2468937-2515855 protein_coding
ENST00000502316 (RNF4-008) 2469097-2513811 protein_coding
ENST00000503123 (RNF4-017) 2469181-2497103 processed_transcript
ENST00000503659 (RNF4-010) 2462220-2497012 protein_coding
ENST00000504224 (RNF4-006) 2468729-2500738 protein_coding
ENST00000504782 (RNF4-012) 2469107-2490798 retained_intron
ENST00000506706 (RNF4-003) 2469453-2514474 protein_coding
ENST00000507247 (RNF4-020) 2469105-2513711 protein_coding
ENST00000507784 (RNF4-013) 2469137-2497300 retained_intron
ENST00000508235 (RNF4-022) 2512477-2625320 nonsense_mediated_decay
ENST00000509206 (RNF4-016) 2469194-2497079 processed_transcript
ENST00000509258 (RNF4-002) 2469106-2512334 protein_coding
ENST00000509388 (RNF4-007) 2469104-2513131 processed_transcript
ENST00000511600 (RNF4-005) 2479853-2515854 protein_coding
ENST00000511843 (RNF4-011) 2469106-2512590 processed_transcript
ENST00000511859 (RNF4-004) 2469140-2514503 protein_coding
ENST00000511892 (RNF4-015) 2469140-2497079 processed_transcript
ENST00000513284 (RNF4-019) 2469107-2512511 nonsense_mediated_decay
ENST00000513450 (RNF4-021) 2489811-2500698 protein_coding
ENST00000513578 (RNF4-014) 2469139-2500748 nonsense_mediated_decay
ENST00000513643 (RNF4-018) 2469159-2512597 processed_transcript
ENST00000541204 (RNF4-201) 2469068-2515854 protein_coding
ENSG00000168884 (TNIP2)
TNFAIP3 interacting protein 2 		ENST00000315423 (TNIP2-001) 2741660-2756376 protein_coding
ENST00000502256 (TNIP2-007) 2742075-2744863 retained_intron
ENST00000503235 (TNIP2-003) 2741698-2756342 protein_coding
ENST00000505186 (TNIP2-006) 2742130-2746158 processed_transcript
ENST00000507686 (TNIP2-005) 2745336-2756024 retained_intron
ENST00000510267 (TNIP2-002) 2741648-2756331 protein_coding
ENST00000511352 (TNIP2-004) 2747450-2756024 retained_intron

Homo sapiens Ensembl (GRCh38)

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CIL_0003OC_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000037210-ENSMUSG00000059866 CGP 10090 5:34369933-34513997
GeneTranscriptPositionBiotype
ENSMUSG00000037210 (Fam193a)
family with sequence similarity 193, member A 		ENSMUST00000094867 (Fam193a-201) 34426337-34485747 protein_coding
ENSMUST00000180376 (Fam193a-001) 34369933-34486456 protein_coding
ENSMUST00000181379 (Fam193a-002) 34466129-34477689 protein_coding
ENSMUSG00000059866 (Tnip2)
TNFAIP3 interacting protein 2 		ENSMUST00000030991 (Tnip2-002) 34496087-34513963 protein_coding
ENSMUST00000087737 (Tnip2-001) 34496087-34513991 protein_coding
ENSMUST00000114359 (Tnip2-003) 34496130-34513938 protein_coding
ENSMUST00000137555 (Tnip2-004) 34501172-34513849 retained_intron
ENSMUST00000143072 (Tnip2-005) 34499605-34501618 retained_intron
ENSMUST00000144791 (Tnip2-006) 34496089-34513997 retained_intron
ENSMUST00000159102 (Tnip2-007) 34503286-34513660 retained_intron
ENSMUSG00000098062 (Gm26931)
predicted gene, 26931 		ENSMUST00000182273 (Gm26931-001) 34481914-34482522 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OC_0001ENSDARG00000036595ENSDART00000075216ENSDARG00000074501ENSDART00000113542CIL_0003OC_0002ENSG00000063978ENST00000314289ENST00000502316ENST00000503123ENST00000503659ENST00000504224ENST00000504782ENST00000506706ENST00000507247ENST00000507784ENST00000508235ENST00000509206ENST00000509258ENST00000509388ENST00000511600ENST00000511843ENST00000511859ENST00000511892ENST00000513284ENST00000513450ENST00000513578ENST00000513643ENST00000541204ENSG00000168884ENST00000315423ENST00000502256ENST00000503235ENST00000505186ENST00000507686ENST00000510267ENST00000511352CIL_0003OC_0003ENSMUSG00000037210ENSMUST00000094867ENSMUST00000180376ENSMUST00000181379ENSMUSG00000059866ENSMUST00000030991ENSMUST00000087737ENSMUST00000114359ENSMUST00000137555ENSMUST00000143072ENSMUST00000144791ENSMUST00000159102ENSMUSG00000098062ENSMUST00000182273
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OC_0001ENSDARG00000036595ENSDART00000075216ENSDARG00000074501ENSDART00000113542CIL_0003OC_0002ENSG00000063978ENST00000314289ENST00000511843ENST00000511859ENST00000513284ENST00000541204ENSG00000168884ENST00000315423ENST00000502256ENST00000503235ENST00000505186CIL_0003OC_0003ENSMUSG00000037210ENSMUST00000094867ENSMUST00000180376ENSMUST00000181379ENSMUSG00000059866ENSMUST00000030991ENSMUST00000087737ENSMUST00000114359ENSMUST00000137555ENSMUST00000144791ENSMUSG00000098062ENSMUST00000182273
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000036595 ENSDART00000075216 N/A N/A N/A 3.839±1.86 N/A N/A 2.532±0.82 2.566±0.71 0.590±0.00 N/A 1.926±0.00 N/A N/A N/A
ENSDARG00000074501 ENSDART00000113542 N/A N/A N/A 0.317±0.28 N/A N/A 3.117±0.00 N/A 0.258±0.00 N/A 1.460±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000063978 ENST00000314289 20.047±0.00 9.646±0.00 N/A 3.993±0.00 7.840±0.00 12.440±0.00 8.568±0.00 7.916±6.60 4.101±0.10 2.359±0.00 2.644±1.44 13.862±6.57 12.929±2.67 17.107±0.00
ENST00000502316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503123 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503659 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504224 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000504782 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000506706 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507247 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000507784 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000508235 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509206 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509258 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000509388 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511600 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511843 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.896±0.00 N/A N/A N/A
ENST00000511859 N/A N/A 4.073±0.00 N/A N/A N/A N/A N/A N/A N/A N/A 6.681±0.00 N/A N/A
ENST00000511892 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513284 N/A N/A N/A N/A N/A 9.738±0.00 3.325±0.00 N/A N/A 13.240±0.00 N/A N/A N/A N/A
ENST00000513450 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513578 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000513643 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000541204 N/A N/A N/A N/A 4.876±0.00 2.913±0.00 N/A N/A 2.346±0.00 N/A 4.460±0.00 N/A N/A 6.421±0.00
ENSG00000168884 ENST00000315423 21.689±0.00 28.154±0.00 0.800±0.00 2.179±1.40 9.668±6.77 12.412±9.01 6.012±4.80 15.157±13.40 5.780±3.90 17.057±14.28 11.819±9.09 16.478±7.80 21.367±4.17 22.764±5.65
ENST00000502256 N/A 12.069±0.00 N/A 1.389±0.00 N/A 5.424±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000503235 N/A N/A N/A 0.186±0.00 N/A 0.771±0.00 N/A N/A N/A N/A N/A 1.071±0.00 3.413±0.00 3.788±0.00
ENST00000505186 N/A N/A N/A N/A N/A N/A 0.923±0.00 0.850±0.00 0.778±0.00 N/A N/A N/A N/A N/A
ENST00000507686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000510267 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000511352 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000037210 ENSMUST00000094867 N/A 5.449±0.57 N/A N/A 5.103±0.00 4.268±0.71 1.156±0.22 4.028±1.19 1.838±0.33 N/A 0.560±0.00 5.398±1.89 3.076±0.29 N/A
ENSMUST00000180376 8.321±3.07 4.579±2.95 6.550±0.47 16.732±6.09 6.368±2.72 5.582±2.94 2.847±1.00 5.120±2.74 3.765±1.19 8.209±0.75 2.050±0.14 10.448±3.97 10.726±2.97 27.437±6.47
ENSMUST00000181379 N/A N/A N/A N/A 1.668±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000059866 ENSMUST00000030991 N/A N/A N/A N/A N/A N/A N/A 0.809±0.00 N/A N/A N/A N/A N/A N/A
ENSMUST00000087737 4.768±1.58 N/A 8.082±0.39 4.079±3.17 7.862±5.38 7.541±4.17 3.071±0.85 3.818±0.70 2.647±1.15 7.788±2.69 1.039±0.20 14.414±6.72 4.392±1.61 2.109±0.95
ENSMUST00000114359 2.790±0.00 25.124±8.36 N/A N/A 6.701±0.00 6.245±2.46 1.164±0.00 N/A 2.738±1.22 3.598±0.00 N/A 15.421±4.88 N/A N/A
ENSMUST00000137555 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.806±0.00 N/A N/A N/A
ENSMUST00000143072 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000144791 1.896±0.00 6.424±0.00 3.848±0.00 2.060±1.28 N/A 2.565±0.00 1.102±0.00 N/A 0.835±0.16 N/A 0.523±0.01 3.956±0.00 N/A 0.841±0.16
ENSMUST00000159102 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000098062 ENSMUST00000182273 1.717±0.91 1.123±0.78 1.479±0.00 2.314±0.31 1.172±0.22 0.941±0.31 0.191±0.06 0.252±0.10 0.547±0.24 0.683±0.21 0.231±0.13 1.679±0.69 0.708±0.25 0.929±0.50

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