C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: piccolo (presynaptic cytomatrix protein)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000182407 Pclo-002 ENSMUSG00000061601 10090 + 5:14514918-14795993 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000182407
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000182407 0.113±0.04 2.057±0.93 0.057±0.00 0.035±0.03 0.020±0.00 0.116±0.00 0.010±0.01 0.016±0.00 0.099±0.03 0.009±0.00 0.094±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003CW CIL_0003CW_0002 CGP 5:14025276-14860184

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 ISS calcium ion binding
GO:0005515 IPI protein binding
GO:0005522 IDA profilin binding
GO:0005544 ISS calcium-dependent phospholipid binding
GO:0007010 IDA cytoskeleton organization
GO:0014069 IDA postsynaptic density
GO:0016080 NAS synaptic vesicle targeting
GO:0017157 IDA regulation of exocytosis
GO:0019933 IDA cAMP-mediated signaling
GO:0030054 IEA cell junction
GO:0030073 IDA insulin secretion
GO:0045202 IDA synapse

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333891 PCLO-001 protein_coding Homo_sapiens 0 13070
ENST00000413807 PCLO-008 nonsense_mediated_decay Homo_sapiens 0 645
ENST00000423517 PCLO-011 protein_coding Homo_sapiens 0 13390
ENST00000426442 PCLO-004 processed_transcript Homo_sapiens 0 1736
ENST00000432078 PCLO-010 processed_transcript Homo_sapiens 0 311
ENST00000437081 PCLO-003 protein_coding Homo_sapiens 0 4211
ENST00000456006 PCLO-007 nonsense_mediated_decay Homo_sapiens 0 305
ENST00000461143 PCLO-009 processed_transcript Homo_sapiens 0 322
ENST00000618073 PCLO-201 protein_coding Homo_sapiens 0 1736

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