C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleobindin 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000183175 Nucb2-002 ENSMUSG00000030659 10090 + 7:116504415-116540443 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonLiverOvaryENSMUST00000183175
Transcript ID Adrenal Colon Liver Ovary
ENSMUST00000183175 0.602±0.00 0.527±0.30 0.157±0.00 2.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000836 CIL_000836_0002 VISTA 7:115904293-116509702
CIL_0003ZV CIL_0003ZV_0002 CGP 7:116337276-116540554
CIL_0008RM CIL_0008RM_0002 VISTA 7:116387002-116987715

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IDA calcium ion binding
GO:0005634 IDA nucleus
GO:0005640 IDA nuclear outer membrane
GO:0005737 IDA cytoplasm
GO:0005783 IDA endoplasmic reticulum
GO:0006874 TAS cellular calcium ion homeostasis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000323688 NUCB2-004 protein_coding Homo_sapiens 0 1242
ENST00000458064 NUCB2-201 protein_coding Homo_sapiens 0 898
ENST00000526120 NUCB2-007 protein_coding Homo_sapiens 0 193
ENST00000527580 NUCB2-014 protein_coding Homo_sapiens 0 394
ENST00000529010 NUCB2-005 protein_coding Homo_sapiens 0 1197
ENST00000529313 NUCB2-016 protein_coding Homo_sapiens 0 512
ENST00000530527 NUCB2-002 protein_coding Homo_sapiens 0 510
ENST00000531242 NUCB2-013 retained_intron Homo_sapiens 0 451
ENST00000533738 NUCB2-006 protein_coding Homo_sapiens 1.4013e-45 187
ENST00000533773 NUCB2-020 nonsense_mediated_decay Homo_sapiens 0 996
ENST00000533926 NUCB2-017 protein_coding Homo_sapiens 0 268
ENST00000622082 NUCB2-202 protein_coding Homo_sapiens 0 1192

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