C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATP synthase mitochondrial F1 complex assembly factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000184179 Atpaf1-002 ENSMUSG00000028710 10090 + 4:115785212-115814295 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000184179
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000184179 1.425±0.00 0.967±0.26 1.948±1.36 5.310±0.00 2.829±0.15 2.301±0.00 2.961±0.53 1.978±0.69 1.325±0.24 3.770±0.94 2.592±0.59 2.156±1.15 1.229±0.67

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IDA mitochondrion
GO:0006461 IEA protein complex assembly
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000329231 ATPAF1-006 protein_coding Homo_sapiens 0 490
ENST00000371937 ATPAF1-201 protein_coding Homo_sapiens 0 1122
ENST00000474020 ATPAF1-003 retained_intron Homo_sapiens 0 488
ENST00000487193 ATPAF1-004 nonsense_mediated_decay Homo_sapiens 0 268
ENST00000492233 ATPAF1-002 protein_coding Homo_sapiens 0 403
ENST00000526821 ATPAF1-007 protein_coding Homo_sapiens 0 424
ENST00000529214 ATPAF1-009 nonsense_mediated_decay Homo_sapiens 0 931
ENST00000532925 ATPAF1-008 protein_coding Homo_sapiens 0 1011
ENST00000534216 ATPAF1-011 protein_coding Homo_sapiens 0 676
ENST00000542495 ATPAF1-202 protein_coding Homo_sapiens 0 931
ENST00000574428 ATPAF1-012 protein_coding Homo_sapiens 0 1122
ENST00000576409 ATPAF1-001 protein_coding Homo_sapiens 0 1122

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