C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transmembrane protein 194B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185483 Tmem194b-001 ENSMUSG00000043015 10090 + 1:52630747-52650636 nonsense_mediated_decay

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000185483
Transcript ID Adipose Bladder Breast Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000185483 0.745±0.09 1.051±0.00 1.612±0.00 0.658±0.08 0.542±0.22 0.130±0.06 1.120±0.27 0.652±0.22 3.401±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002RZ CIL_0002RZ_0002 CGP 1:52457294-52651919
CIL_0002S3 CIL_0002S3_0002 CGP 1:52630703-52727462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000343105 TMEM194B-002 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000409150 TMEM194B-001 protein_coding Homo_sapiens 0 477
ENST00000414176 TMEM194B-004 nonsense_mediated_decay Homo_sapiens 0 396
ENST00000444545 TMEM194B-003 nonsense_mediated_decay Homo_sapiens 0 252
ENST00000492292 TMEM194B-006 processed_transcript Homo_sapiens 0 228

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