C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0002RZ_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000040700-ENSDARG00000061062 CGP 7955 9:42440891-42554693
GeneTranscriptPositionBiotype
ENSDARG00000040700 (nab1b)
NGFI-A binding protein 1b (EGR1 binding protein 1) 		ENSDART00000059628 (nab1b-001) 42440891-42474607 protein_coding
ENSDARG00000061062 (tmem194b)
transmembrane protein 194B 		ENSDART00000100265 (tmem194b-201) 42533133-42554690 protein_coding
ENSDART00000132501 (tmem194b-002) 42532802-42543451 protein_coding
ENSDART00000137187 (tmem194b-001) 42547666-42554693 protein_coding
ENSDART00000138722 (tmem194b-003) 42547985-42552429 retained_intron
ENSDARG00000092001 (si:dkey-42h23.2)
si:dkey-42h23.2 		ENSDART00000133095 (si:dkey-42h23.2-001) 42518834-42519762 processed_transcript

Danio rerio Ensembl (Zv9)

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CIL_0002RZ_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000002881-ENSMUSG00000043015 CGP 10090 1:52457294-52651919
GeneTranscriptPositionBiotype
ENSMUSG00000002881 (Nab1)
Ngfi-A binding protein 1 		ENSMUST00000069792 (Nab1-001) 52457294-52500679 protein_coding
ENSMUST00000167732 (Nab1-005) 52459241-52467057 retained_intron
ENSMUST00000168082 (Nab1-004) 52490310-52500315 processed_transcript
ENSMUST00000170269 (Nab1-002) 52459218-52490736 protein_coding
ENSMUST00000186764 (Nab1-003) 52457294-52500300 protein_coding
ENSMUSG00000043015 (Tmem194b)
transmembrane protein 194B 		ENSMUST00000165859 (Tmem194b-005) 52630703-52651919 protein_coding
ENSMUST00000185483 (Tmem194b-001) 52630747-52650636 nonsense_mediated_decay
ENSMUST00000185790 (Tmem194b-004) 52630797-52650702 nonsense_mediated_decay
ENSMUST00000186903 (Tmem194b-006) 52641516-52651919 retained_intron
ENSMUST00000188507 (Tmem194b-002) 52630737-52651919 nonsense_mediated_decay
ENSMUST00000190108 (Tmem194b-003) 52630752-52650729 retained_intron
ENSMUST00000190452 (Tmem194b-007) 52641984-52650656 processed_transcript
ENSMUST00000191076 (Tmem194b-008) 52645181-52650027 retained_intron
ENSMUSG00000097833 (Gm5976)
predicted gene 5976 		ENSMUST00000180794 (Gm5976-001) 52503234-52504229 processed_pseudogene
ENSMUSG00000099878 (RP24-388H6.3)
predicted gene 28178 		ENSMUST00000188544 (RP24-388H6.3-001) 52570014-52580291 lincRNA
ENSMUSG00000100007 (RP24-388H6.4)
predicted gene 5527 		ENSMUST00000179821 (RP24-388H6.4-001) 52584518-52585159 processed_pseudogene
ENSMUSG00000100120 (RP24-388H6.2)
predicted gene 553 		ENSMUST00000189527 (RP24-388H6.2-001) 52522902-52582679 lincRNA
ENSMUSG00000101501 (RP24-388H6.1)
ribosomal protein S27A, pseudogene 1 		ENSMUST00000191424 (RP24-388H6.1-001) 52522239-52522701 processed_pseudogene

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002RZ_0001ENSDARG00000040700ENSDART00000059628ENSDARG00000061062ENSDART00000100265ENSDART00000132501ENSDART00000137187ENSDART00000138722ENSDARG00000092001ENSDART00000133095CIL_0002RZ_0002ENSMUSG00000002881ENSMUST00000069792ENSMUST00000167732ENSMUST00000168082ENSMUST00000170269ENSMUST00000186764ENSMUSG00000043015ENSMUST00000165859ENSMUST00000185483ENSMUST00000185790ENSMUST00000186903ENSMUST00000188507ENSMUST00000190108ENSMUST00000190452ENSMUST00000191076ENSMUSG00000097833ENSMUST00000180794ENSMUSG00000099878ENSMUST00000188544ENSMUSG00000100007ENSMUST00000179821ENSMUSG00000100120ENSMUST00000189527ENSMUSG00000101501ENSMUST00000191424
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0002RZ_0001ENSDARG00000040700ENSDART00000059628ENSDARG00000061062ENSDART00000100265ENSDART00000132501ENSDART00000137187ENSDARG00000092001ENSDART00000133095CIL_0002RZ_0002ENSMUSG00000002881ENSMUST00000069792ENSMUST00000170269ENSMUST00000186764ENSMUSG00000043015ENSMUST00000165859ENSMUST00000185483ENSMUST00000185790ENSMUST00000186903ENSMUST00000188507ENSMUST00000190108ENSMUST00000190452ENSMUST00000191076ENSMUSG00000097833ENSMUST00000180794ENSMUSG00000099878ENSMUST00000188544ENSMUSG00000100007ENSMUST00000179821ENSMUSG00000100120ENSMUST00000189527ENSMUSG00000101501ENSMUST00000191424
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000040700 ENSDART00000059628 N/A N/A N/A 0.173±0.00 N/A N/A 0.240±0.02 0.297±0.00 0.063±0.00 N/A 0.378±0.00 N/A N/A N/A
ENSDARG00000061062 ENSDART00000100265 N/A N/A N/A 4.750±0.42 N/A N/A 2.944±0.12 3.241±0.00 0.409±0.00 N/A 0.941±0.00 N/A N/A N/A
ENSDART00000132501 N/A N/A N/A 3.269±0.00 N/A N/A N/A N/A 0.300±0.00 N/A N/A N/A N/A N/A
ENSDART00000137187 N/A N/A N/A 5.563±3.29 N/A N/A 3.955±1.75 2.218±0.11 N/A N/A 0.146±0.00 N/A N/A N/A
ENSDART00000138722 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSDARG00000092001 ENSDART00000133095 N/A N/A N/A 0.190±0.03 N/A N/A N/A 0.135±0.00 N/A N/A N/A N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000002881 ENSMUST00000069792 7.816±1.36 3.599±0.36 8.630±0.46 1.701±0.34 3.922±2.02 10.970±1.39 3.459±0.32 4.810±1.01 6.766±1.99 4.786±0.89 1.555±0.27 7.633±1.32 6.524±3.22 1.527±0.13
ENSMUST00000167732 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000168082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000170269 N/A N/A N/A 5.733±0.00 1.766±0.00 N/A N/A 2.870±0.25 N/A 3.996±0.17 1.235±0.00 8.767±6.40 N/A 1.746±1.18
ENSMUST00000186764 2.612±0.27 1.703±0.63 5.138±0.16 1.343±0.58 1.669±0.56 N/A 0.731±0.13 0.815±0.19 2.088±0.76 3.147±0.50 0.227±0.00 4.323±1.24 1.387±0.45 1.005±0.00
ENSMUSG00000043015 ENSMUST00000165859 0.293±0.00 0.710±0.00 1.131±0.27 N/A 1.987±0.49 1.177±0.30 0.423±0.20 0.535±0.18 0.605±0.38 2.213±1.07 0.121±0.04 1.908±1.09 1.614±0.78 N/A
ENSMUST00000185483 0.745±0.09 N/A 1.051±0.00 N/A 1.612±0.00 N/A N/A 0.658±0.08 0.542±0.22 N/A 0.130±0.06 1.120±0.27 0.652±0.22 3.401±0.00
ENSMUST00000185790 N/A N/A N/A 0.624±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.475±1.94
ENSMUST00000186903 0.472±0.12 0.351±0.00 0.691±0.08 1.777±1.22 0.958±0.18 0.358±0.06 0.247±0.05 0.350±0.00 0.380±0.15 1.441±0.12 0.085±0.02 0.823±0.41 0.304±0.22 N/A
ENSMUST00000188507 1.931±0.18 0.335±0.00 1.407±0.02 2.641±0.71 1.331±0.21 N/A N/A 0.484±0.23 0.361±0.16 1.776±0.75 0.165±0.05 1.174±0.43 0.628±0.00 1.348±0.78
ENSMUST00000190108 N/A 0.164±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190452 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.122±0.00 1.379±0.00 N/A 3.808±0.00
ENSMUST00000191076 N/A 0.641±0.00 N/A N/A N/A 1.440±0.00 N/A N/A 0.074±0.00 N/A N/A 3.518±0.00 N/A 7.263±0.00
ENSMUSG00000097833 ENSMUST00000180794 0.369±0.17 0.176±0.09 0.295±0.02 0.113±0.06 0.774±0.18 0.255±0.10 0.174±0.04 0.175±0.06 0.099±0.06 0.830±0.16 0.048±0.02 0.944±0.43 0.051±0.02 0.149±0.10
ENSMUSG00000099878 ENSMUST00000188544 N/A N/A N/A N/A N/A N/A N/A N/A 0.006±0.00 0.137±0.04 N/A 0.086±0.05 0.010±0.00 N/A
ENSMUSG00000100007 ENSMUST00000179821 N/A N/A 0.221±0.01 0.220±0.10 0.188±0.00 0.312±0.00 0.067±0.00 N/A 0.147±0.12 0.109±0.00 0.079±0.00 0.281±0.14 0.063±0.05 0.149±0.08
ENSMUSG00000100120 ENSMUST00000189527 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.150±0.00 0.079±0.04 0.042±0.00 0.088±0.06 N/A
ENSMUSG00000101501 ENSMUST00000191424 0.115±0.00 N/A N/A 0.034±0.00 0.531±0.04 0.306±0.00 N/A 0.157±0.05 0.058±0.03 0.146±0.00 0.287±0.00 0.660±0.00 0.084±0.05 0.130±0.00

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