C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: regulating synaptic membrane exocytosis 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000185942 Rims1-002 ENSMUSG00000041670 10090 - 1:22288422-22432843 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeHeartLungPlacentaTestisENSMUST00000185942
Transcript ID Adipose Heart Lung Placenta Testis
ENSMUST00000185942 0.014±0.00 0.028±0.00 0.007±0.00 0.041±0.02 0.379±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00053Q CIL_00053Q_0002 CGP 1:21398403-22805724

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0042391 IDA regulation of membrane potential
GO:0044325 IDA ion channel binding
GO:0045202 IDA synapse
GO:0048169 IMP regulation of long-term neuronal synaptic plasticity
GO:0048791 IGI calcium ion-dependent exocytosis of neurotransmitter

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264839 RIMS1-003 protein_coding Homo_sapiens 0 1676
ENST00000370419 RIMS1-001 retained_intron Homo_sapiens 0 540
ENST00000370420 RIMS1-004 protein_coding Homo_sapiens 0 1676
ENST00000401910 RIMS1-013 protein_coding Homo_sapiens 0 1676
ENST00000414192 RIMS1-009 protein_coding Homo_sapiens 0 863
ENST00000425662 RIMS1-015 protein_coding Homo_sapiens 0 861
ENST00000431478 RIMS1-021 processed_transcript Homo_sapiens 0 726
ENST00000453976 RIMS1-016 protein_coding Homo_sapiens 0 1234
ENST00000463023 RIMS1-020 retained_intron Homo_sapiens 0 861
ENST00000491071 RIMS1-010 protein_coding Homo_sapiens 0 1096
ENST00000517433 RIMS1-012 protein_coding Homo_sapiens 0 1674
ENST00000517827 RIMS1-018 protein_coding Homo_sapiens 0 861
ENST00000517960 RIMS1-005 protein_coding Homo_sapiens 0 1127
ENST00000518273 RIMS1-006 protein_coding Homo_sapiens 0 861
ENST00000520567 RIMS1-007 protein_coding Homo_sapiens 0 861
ENST00000521978 RIMS1-011 protein_coding Homo_sapiens 0 2311
ENST00000522211 RIMS1-019 protein_coding Homo_sapiens 0 1567
ENST00000522291 RIMS1-008 protein_coding Homo_sapiens 0 861
ENST00000523963 RIMS1-014 protein_coding Homo_sapiens 0 861
ENST00000524197 RIMS1-017 retained_intron Homo_sapiens 0 702

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